Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120126.Seq
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.063
03_06_0778 - 36188675-36188922,36189154-36189214,36189531-361896... 30 2.4
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 29 5.4
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 28 9.5
03_05_1004 + 29621209-29621590,29622615-29622827,29622974-296233... 28 9.5
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 28 9.5
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 9.5
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.1 bits (77), Expect = 0.063
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 338 FIKFGKHELFENNNEQQSTFDIIQRFICEVYNVGSITDVDAARLQLFI 481
F+K + EL E Q+ +++QR E Y+ G+ D +A LQLFI
Sbjct: 768 FVKAAEQELNELKGNQEKVLELVQR-TTEYYHTGATKDKNAHPLQLFI 814
>03_06_0778 -
36188675-36188922,36189154-36189214,36189531-36189635,
36189731-36189835,36189916-36189997,36190337-36190536,
36190635-36190796,36190926-36191035,36191133-36191256,
36191408-36191674
Length = 487
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 31 KIVYHACSIRNQVNIVIKSVDTDIPAIMLGHM-HYLQNDSL 150
+++ H+ + VN++ +T P + LGH+ H L D L
Sbjct: 411 EVILHSVDVNIYVNVMTSETNTSTPPLKLGHLCHDLLEDDL 451
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 58 RNQVNIVIKS-VDTDIPAIMLGHMHYLQNDSLI*MLIGTGNKLRYIDLTEIYVK-LGK 225
RN +N+ + V+ + + LGH Y +D++ ++IG G YI+ + +K LG+
Sbjct: 222 RNGLNMKVNVLVNNTVGTLALGH--YYDDDTVAAVIIGAGTNACYIERNDAIIKSLGR 277
>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 196 LTEIYVKLGKSFCKSLPGFQRSQVMIIILH 285
L +IY+ LGK+F L G +Q+ ++ ++
Sbjct: 1353 LVDIYIMLGKAFVPYLEGLNSTQLRLVTIY 1382
>03_05_1004 +
29621209-29621590,29622615-29622827,29622974-29623337,
29623751-29624573
Length = 593
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/50 (20%), Positives = 26/50 (52%)
Frame = +1
Query: 523 KKLRNFDVSSLPPCKSELLQQFLRAYNYVSSIWNNTNQPILTILSTENNG 672
++++N+ ++ PC + + +N + ++ + +LT +ST N G
Sbjct: 301 QQMKNYAANTANPCSLQYSRDLANKHNESEQVQDSDSLSMLTSISTRNTG 350
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 196 LTEIYVKLGKSFCKSLPGFQRSQVMIIILH 285
L +IY+ LGK+F L G +Q+ ++ ++
Sbjct: 1309 LVDIYIMLGKAFVPYLEGLNSTQLRLVTIY 1338
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 88 VDTDIPAIMLGHMHYLQNDSLI*MLIGTGNKLRYIDLTEIYVK 216
V+ + + LGH Y D++ ++IG+G YI+ T+ +K
Sbjct: 295 VNDTVGTLALGH--YYDEDTVAAVIIGSGTNACYIERTDAIIK 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,099,418
Number of Sequences: 37544
Number of extensions: 339565
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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