Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120126.Seq
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS cla...    29   2.6  
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat...    29   3.4  
At1g28140.1 68414.m03452 expressed protein contains similarity t...    29   4.5  

>At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 429

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 401 IIQRFICEVYNVGSITDVDAARLQLFINTYQVSDINKRLAVKNYEILMLAVC 556
           ++Q  IC++Y+VG  TD DA ++       Q S  +  + +   E + + +C
Sbjct: 344 LVQHGICDIYHVGFPTDADALKIFCLSAYRQTSPPDGSMKIHECE-MFIKIC 394


>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
            similar to CLIP-associating protein CLASP2 (GI:13508651)
            [Rattus norvegicus]
          Length = 1439

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 196  LTEIYVKLGKSFCKSLPGFQRSQVMIIILH 285
            L +IY+ LGK+F   L G   +QV ++ ++
Sbjct: 1393 LVDIYIMLGKAFLPYLEGLNSTQVRLVTIY 1422


>At1g28140.1 68414.m03452 expressed protein contains similarity to
           cytochrome oxidase I GI:1289267 from (Xantholinus sp.)
          Length = 280

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 100 IPAIMLGHMHYLQNDSLI*MLIGT 171
           IP+++LGH+  L ND +  +L+GT
Sbjct: 207 IPSVLLGHLSGLMNDEVKLVLLGT 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,547,565
Number of Sequences: 28952
Number of extensions: 306051
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)