Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120125.Seq
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.60 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.80 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.4  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   2.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.2  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   7.4  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.4  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
 Frame = +1

Query: 208 YTWTK*IYW---SSAFTTFHELLRKRLGLPVWE---YKNDFMRLLNTHQCIVLVGETGSG 369
           Y+WT+   +   S + T F  L+ KR   PV +    KN F  +    + + ++G +G+G
Sbjct: 59  YSWTEINAFANVSPSKTKFFNLI-KRKDSPVQKKHILKNVF-GVAYPGELLAILGSSGAG 116

Query: 370 KTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVA-EEMDGLWVRKL 528
           KTT +   ++ F   S L    G+ C     V++ ++A + A  + D L++  L
Sbjct: 117 KTTLLN--TLTFHTSSNL-TVSGLRCVNGIPVSSKTLASQSAYVQQDDLFIGTL 167


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
 Frame = +1

Query: 208 YTWTK*IYWSSAF---TTFHELLRKRLGLPVWE---YKNDFMRLLNTHQCIVLVGETGSG 369
           Y+WT+   +++     T F  L+ KR   PV +    KN F  +    + + ++G +G+G
Sbjct: 59  YSWTEINAFANVSPPKTKFFNLI-KRKDSPVQKKHILKNVF-GVAYPGELLAILGSSGAG 116

Query: 370 KTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVA-EEMDGLWVRKL 528
           KTT +   ++ F   S L    G+ C     V++ ++A + A  + D L++  L
Sbjct: 117 KTTLLN--TLTFHTSSNL-TVSGLRCVNGIPVSSKTLASQSAYVQQDDLFIGTL 167


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 683 CCKCPFVGFIEEYNSILFYHWVRHS 609
           C KCPF   I EY   L YH   H+
Sbjct: 233 CPKCPF---ITEYKHHLEYHLRNHA 254


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 205 QYTWTK*IYWSSAFTTFHELLRK 273
           QYT T+   W S F T  EL+ K
Sbjct: 253 QYTETETKTWGSVFNTVLELMPK 275


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 502 MDGLWVRKLVTAFVLKTVQGHKH 570
           ++ L  RKL++A+ + TV GH++
Sbjct: 374 INNLTDRKLLSAWYMNTVLGHQN 396


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 502 MDGLWVRKLVTAFVLKTVQGHKH 570
           ++ L  RKL++A+ + TV GH++
Sbjct: 266 INNLTDRKLLSAWYMNTVLGHQN 288


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 452 NQDEWLLCLLLRG 490
           N+  WL CLLL G
Sbjct: 3   NKTYWLCCLLLLG 15


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 452 NQDEWLLCLLLRG 490
           N+  WL CLLL G
Sbjct: 3   NKTYWLCCLLLLG 15


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,919
Number of Sequences: 336
Number of extensions: 3869
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)