Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120125.Seq
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.93 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.6  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 106 QKEKGREGCGCCEIRNHR*TFRSNYQYDYHHGYQY---TWTK*IYWSSAFTTFHEL 264
           ++E+ RE      + N      +NY+Y+Y++ Y Y    + K +Y+ +      ++
Sbjct: 72  ERERSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQI 127


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 330 SPMYSARRRNRVREDYPDPPVVCRVCCSKWPRQG*RRGLYSTKTSGC 470
           +P  S     RV  ++    V+CRVC  K    G   G++S +  GC
Sbjct: 45  APQDSENLLGRVLAEFDGTTVLCRVCGDK--ASGFHYGVHSCE--GC 87


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 674  CPFVGFIEEYNSILFYHW 621
            CP + F  +Y  I  +HW
Sbjct: 1527 CPILYFTIQYRPINEFHW 1544


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 674  CPFVGFIEEYNSILFYHW 621
            CP + F  +Y  I  +HW
Sbjct: 1523 CPILYFTIQYRPINEFHW 1540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,805
Number of Sequences: 438
Number of extensions: 4487
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)