Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120125.Seq
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 115 3e-26
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 111 3e-25
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 103 1e-22
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 98 4e-21
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 98 4e-21
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 97 1e-20
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 95 5e-20
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 91 5e-19
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 88 6e-18
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1... 85 3e-17
At1g58060.1 68414.m06580 helicase domain-containing protein cont... 85 4e-17
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 81 5e-16
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 80 1e-15
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 79 3e-15
At2g01130.1 68415.m00021 helicase domain-containing protein simi... 78 5e-15
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 74 1e-13
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 72 4e-13
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 71 1e-12
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 67 9e-12
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ... 66 2e-11
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 45 4e-05
At1g65560.1 68414.m07437 allyl alcohol dehydrogenase, putative s... 29 3.0
At5g46540.1 68418.m05730 ABC transporter family protein contains... 29 4.0
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 28 5.3
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 28 5.3
At5g03180.1 68418.m00266 zinc finger (C3HC4-type RING finger) fa... 28 7.0
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 7.0
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 115 bits (277), Expect = 3e-26
Identities = 49/64 (76%), Positives = 62/64 (96%)
Frame = +3
Query: 513 LGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLATDIL 692
+G+EVGYSIRFEDCS P+T+LKY+TDGMLLREAM+DP++E+Y+VI+LDEAHERTLATD+L
Sbjct: 140 IGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADPLLERYKVIILDEAHERTLATDVL 199
Query: 693 MGVL 704
G+L
Sbjct: 200 FGLL 203
Score = 100 bits (240), Expect = 8e-22
Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 FHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKA 432
++++L KR LPVW K +F++ LN +Q ++LVGETGSGKTTQIPQ+ ++ K
Sbjct: 51 YYDILEKRRTLPVWLQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFVIDAVDAETSDKR 110
Query: 433 KG--VACTQPRRVAAMSVAQRVAEEMD 507
+ V CTQPRRVAAMSV++RVAEEMD
Sbjct: 111 RKWLVGCTQPRRVAAMSVSRRVAEEMD 137
>At2g47250.1 68415.m05900 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 729
Score = 111 bits (268), Expect = 3e-25
Identities = 47/65 (72%), Positives = 62/65 (95%)
Frame = +3
Query: 510 ALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLATDI 689
++G+EVGYSIRFEDC+ +T+LKY+TDGMLLREAM+DP++E+Y+VI+LDEAHERTLATD+
Sbjct: 143 SIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLERYKVIILDEAHERTLATDV 202
Query: 690 LMGVL 704
L G+L
Sbjct: 203 LFGLL 207
Score = 102 bits (245), Expect = 2e-22
Identities = 49/87 (56%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 FHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKA 432
+ E+L KR LPVW K+DF+ LN++Q ++LVGETGSGKTTQIPQ+ ++ K
Sbjct: 55 YFEILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKG 114
Query: 433 KG--VACTQPRRVAAMSVAQRVAEEMD 507
+ V CTQPRRVAAMSV++RVA+EMD
Sbjct: 115 RKWLVGCTQPRRVAAMSVSRRVADEMD 141
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00575: S1 RNA binding domain
Length = 1168
Score = 103 bits (247), Expect = 1e-22
Identities = 45/67 (67%), Positives = 56/67 (83%)
Frame = +3
Query: 504 GWALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLAT 683
G LG+EVGY+IRFEDC+GP T++KYMTDGMLLRE + D + QY VI+LDEAHERT+ T
Sbjct: 585 GCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHT 644
Query: 684 DILMGVL 704
D+L G+L
Sbjct: 645 DVLFGLL 651
Score = 78.2 bits (184), Expect = 5e-15
Identities = 39/77 (50%), Positives = 57/77 (74%)
Frame = +1
Query: 271 KRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACT 450
+R LP+++ K + ++ ++ +Q +V++GETGSGKTTQ+ Q+ E A + GK + CT
Sbjct: 511 QRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAE-AGYTTKGK---IGCT 566
Query: 451 QPRRVAAMSVAQRVAEE 501
QPRRVAAMSVA+RVAEE
Sbjct: 567 QPRRVAAMSVAKRVAEE 583
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 98.3 bits (234), Expect = 4e-21
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +3
Query: 504 GWALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLAT 683
G LG EVGYSIRFEDC+ +T+LKYMTDGMLLRE + +P + Y VI++DEAHERTL T
Sbjct: 540 GGKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLRELLGEPDLGSYSVIIVDEAHERTLRT 599
Query: 684 DILMGVL 704
DIL G++
Sbjct: 600 DILFGLV 606
Score = 95.5 bits (227), Expect = 3e-20
Identities = 49/92 (53%), Positives = 63/92 (68%)
Frame = +1
Query: 235 SSAFTTFHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAV 414
S+ + FH L R LP++ Y++ + + HQ +++VGETGSGKTTQIPQ+ E A
Sbjct: 454 SAGKSAFHMLQEDRKALPIYTYRDQLLNAVKDHQVLIIVGETGSGKTTQIPQYLHE-AGY 512
Query: 415 SGLGKAKGVACTQPRRVAAMSVAQRVAEEMDG 510
+ LGK V CTQPRRVAAMSVA RVA+EM G
Sbjct: 513 TKLGK---VGCTQPRRVAAMSVAARVAQEMGG 541
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 98.3 bits (234), Expect = 4e-21
Identities = 43/67 (64%), Positives = 55/67 (82%)
Frame = +3
Query: 504 GWALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLAT 683
G LG EVGYSIRFEDC+ +T+LKYMTDGMLLRE + +P + Y V+++DEAHERTL+T
Sbjct: 474 GVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLRELLGEPDLASYSVVIVDEAHERTLST 533
Query: 684 DILMGVL 704
DIL G++
Sbjct: 534 DILFGLV 540
Score = 89.4 bits (212), Expect = 2e-18
Identities = 45/86 (52%), Positives = 58/86 (67%)
Frame = +1
Query: 247 TTFHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLG 426
T EL R LP++ Y++ ++ + HQ +V+VG+TGSGKTTQIPQ+ E +G
Sbjct: 392 TALEELQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHE----AGYT 447
Query: 427 KAKGVACTQPRRVAAMSVAQRVAEEM 504
K V CTQPRRVAAMSVA RVA+EM
Sbjct: 448 KRGKVGCTQPRRVAAMSVAARVAQEM 473
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 97.1 bits (231), Expect = 1e-20
Identities = 42/67 (62%), Positives = 55/67 (82%)
Frame = +3
Query: 504 GWALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLAT 683
G LG EVGYSIRFEDC+ +T++KYMTDGMLLRE + +P ++ Y VI++DEAHERTL+T
Sbjct: 292 GVKLGHEVGYSIRFEDCTSEKTVIKYMTDGMLLRELLIEPKLDSYSVIIIDEAHERTLST 351
Query: 684 DILMGVL 704
DIL ++
Sbjct: 352 DILFALV 358
Score = 82.2 bits (194), Expect = 3e-16
Identities = 40/74 (54%), Positives = 54/74 (72%)
Frame = +1
Query: 283 LPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRR 462
LP+ Y+ + ++L+ +Q +V+VGETGSGKTTQIPQ+ E +G K + CTQPRR
Sbjct: 222 LPIHGYREELLKLIEENQVLVIVGETGSGKTTQIPQYLQE----AGYTKRGKIGCTQPRR 277
Query: 463 VAAMSVAQRVAEEM 504
VAAMSVA RVA+E+
Sbjct: 278 VAAMSVASRVAQEV 291
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 94.7 bits (225), Expect = 5e-20
Identities = 38/64 (59%), Positives = 55/64 (85%)
Frame = +3
Query: 513 LGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLATDIL 692
LG ++GY+IRFED +GP T++KYMTDG+LLRE + D +++YRV+++DEAHER+L TD+L
Sbjct: 602 LGDKIGYAIRFEDVTGPNTVIKYMTDGVLLRETLKDSDLDKYRVVVMDEAHERSLNTDVL 661
Query: 693 MGVL 704
G+L
Sbjct: 662 FGIL 665
Score = 75.8 bits (178), Expect = 3e-14
Identities = 40/90 (44%), Positives = 61/90 (67%)
Frame = +1
Query: 238 SAFTTFHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVS 417
S F + +R LP++ +++ ++++ +Q IV+VGETGSGKTTQ+ Q + ++
Sbjct: 518 SEFAMSKTMAEQRQYLPIFSVRDELLQVIRENQVIVVVGETGSGKTTQLTQ---DGYTIN 574
Query: 418 GLGKAKGVACTQPRRVAAMSVAQRVAEEMD 507
G+ V CTQPRRVAAMSVA+RV+EEM+
Sbjct: 575 GI-----VGCTQPRRVAAMSVAKRVSEEME 599
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/64 (60%), Positives = 57/64 (89%)
Frame = +3
Query: 513 LGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLATDIL 692
LG++VGY+IRFED + +T +KY+TDG+LLRE++S+PM++ Y VI+LDEAHER+L TDIL
Sbjct: 77 LGEDVGYAIRFEDRTTSKTRIKYLTDGVLLRESLSNPMLDDYSVIILDEAHERSLNTDIL 136
Query: 693 MGVL 704
+G++
Sbjct: 137 LGLV 140
Score = 64.5 bits (150), Expect = 7e-11
Identities = 32/75 (42%), Positives = 50/75 (66%)
Frame = +1
Query: 283 LPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRR 462
LP+ +++ + + + +V++GETGSGK+TQ+ Q G K+ +A TQPRR
Sbjct: 4 LPILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQ----ILHRHGYTKSGVIAITQPRR 59
Query: 463 VAAMSVAQRVAEEMD 507
VAA+SVA+RVA+E+D
Sbjct: 60 VAAVSVARRVAQELD 74
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/64 (59%), Positives = 53/64 (82%)
Frame = +3
Query: 513 LGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLATDIL 692
LGQ+VGYSIRF+D + T LKYMTDG+LLREA+ DP + +Y VI++DEAH+R++ TD+L
Sbjct: 115 LGQKVGYSIRFDDTTSGSTRLKYMTDGLLLREALLDPHLSRYSVIIVDEAHDRSVHTDVL 174
Query: 693 MGVL 704
+ +L
Sbjct: 175 LALL 178
Score = 66.1 bits (154), Expect = 2e-11
Identities = 36/90 (40%), Positives = 55/90 (61%)
Frame = +1
Query: 238 SAFTTFHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVS 417
S F+ ++ R LP+ + + + + +++VGETGSGKTTQ+PQ+ A
Sbjct: 26 SPFSMRQKIAEHRRSLPIASVEKRLVEEVQKNDILIIVGETGSGKTTQLPQFLYN-AGFC 84
Query: 418 GLGKAKGVACTQPRRVAAMSVAQRVAEEMD 507
GK G+ TQPRR+AA++VA+RVAEE +
Sbjct: 85 REGKMIGI--TQPRRIAAVTVAKRVAEECE 112
>At4g18465.1 68417.m02740 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 704
Score = 85.4 bits (202), Expect = 3e-17
Identities = 38/68 (55%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
Frame = +3
Query: 504 GWALGQEVGYSIRFED-CSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLA 680
G LG+EVGY+IRFED + T +K++TDG+L+RE M DP++ +Y VI++DEAHER+++
Sbjct: 119 GVNLGEEVGYTIRFEDHTTSGVTSVKFLTDGVLIREMMEDPLLTKYSVIMIDEAHERSIS 178
Query: 681 TDILMGVL 704
TDIL+G+L
Sbjct: 179 TDILLGLL 186
Score = 81.4 bits (192), Expect = 5e-16
Identities = 40/90 (44%), Positives = 59/90 (65%)
Frame = +1
Query: 235 SSAFTTFHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAV 414
SS+ + + ++R LPV++Y+ + + L+ H ++VGETGSGKTTQIPQ+ E
Sbjct: 32 SSSSYGYANIEKQRQRLPVYKYRTEILYLVENHATTIIVGETGSGKTTQIPQYLKEAGWA 91
Query: 415 SGLGKAKGVACTQPRRVAAMSVAQRVAEEM 504
G + +ACTQPRR+A +V+ RVAEEM
Sbjct: 92 EG---GRVIACTQPRRLAVQAVSARVAEEM 118
>At1g58060.1 68414.m06580 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1459
Score = 85.0 bits (201), Expect = 4e-17
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = +1
Query: 253 FHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKA 432
+ ++L+ R LP+ E KN ++ L +V+ GETGSGKTTQ+PQ+ ++ SG G
Sbjct: 604 YKDMLKTRTALPISEVKNGILQHLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHGGY 663
Query: 433 KGVACTQPRRVAAMSVAQRVAEE 501
+ CTQPRR+AA+SVAQRVA+E
Sbjct: 664 CNIICTQPRRIAAISVAQRVADE 686
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/60 (38%), Positives = 34/60 (56%)
Frame = +3
Query: 525 VGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLATDILMGVL 704
VGY +R E +T L + T G+LLR+ D + I++DE HER+L D L+ +L
Sbjct: 699 VGYQVRLESARSDKTRLLFCTTGILLRKLAGDRTLNDVTHIIVDEVHERSLLGDFLLIIL 758
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 81.4 bits (192), Expect = 5e-16
Identities = 38/92 (41%), Positives = 60/92 (65%)
Frame = +1
Query: 259 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 438
E R GLP++ Y+ ++ ++ Q +VL+GETGSGK+TQ+ V+F A SG+ ++
Sbjct: 298 ECRRLEDGLPIYAYRRQILKKIHREQIMVLIGETGSGKSTQL----VQFLADSGVAASES 353
Query: 439 VACTQPRRVAAMSVAQRVAEEMDGLWVRKLVT 534
+ CTQPR++AAM++A RV EE G + V+
Sbjct: 354 IVCTQPRKIAAMTLADRVREESSGCYEENTVS 385
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +3
Query: 579 YMTDGMLLREAMSDPMVEQYRVILLDEAHERTLATDILMGVL 704
YMTD LL+ M D + +++DEAHER+L TD+L+ +L
Sbjct: 402 YMTDNCLLQHYMKDRSLSGISCVIIDEAHERSLNTDLLLALL 443
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/97 (38%), Positives = 60/97 (61%)
Frame = +1
Query: 244 FTTFHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGL 423
+ E R GLP++ Y+ ++ ++ Q +VL+GETGSGK+TQ+ V+F A SG+
Sbjct: 290 YLILRECRRLEDGLPIYAYRRQILKKIHCEQIMVLIGETGSGKSTQL----VQFLADSGV 345
Query: 424 GKAKGVACTQPRRVAAMSVAQRVAEEMDGLWVRKLVT 534
++ + CTQPR++AAM++ RV EE G + V+
Sbjct: 346 AASESIVCTQPRKIAAMTLTDRVREESSGCYEENTVS 382
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +3
Query: 579 YMTDGMLLREAMSDPMVEQYRVILLDEAHERTLATDILMGVL 704
YMTD LL+ M D + +++DEAHER+L TD+L+ +L
Sbjct: 399 YMTDNCLLQHYMKDRSLSGISCVIIDEAHERSLNTDLLLALL 440
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/67 (52%), Positives = 52/67 (77%)
Frame = +3
Query: 504 GWALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLAT 683
G LG+EVG+ +R++ G + +K+MTDG+LLRE +D ++ +Y VI+LDEAHER+L T
Sbjct: 317 GVRLGKEVGFQVRYDKKIGENSSIKFMTDGILLREIQNDFLLRRYSVIILDEAHERSLNT 376
Query: 684 DILMGVL 704
DIL+G+L
Sbjct: 377 DILIGML 383
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVE--FAAVSGLGKA 432
E+ R LP+ + + M +N H +++ G+TG GKTTQ+PQ+ E F + ++
Sbjct: 233 EVEETRKDLPIVMMEQEIMEAINRHPAVIISGQTGCGKTTQVPQFLYEAGFGSKQFSSRS 292
Query: 433 KGVACTQPRRVAAMSVAQRVAEEM 504
+ TQPRRVA ++ A+RVA E+
Sbjct: 293 GIIGITQPRRVAVLATAKRVAFEL 316
>At2g01130.1 68415.m00021 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1112
Score = 78.2 bits (184), Expect = 5e-15
Identities = 37/91 (40%), Positives = 57/91 (62%)
Frame = +1
Query: 229 YWSSAFTTFHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFA 408
YW ++ +L R LP ++ ++ + ++ +Q IV+ GETG GKTTQIPQ+ +E
Sbjct: 202 YWQASVEG-QRMLDSRTSLPAFKQRHSVLTAISQNQVIVISGETGCGKTTQIPQFILESE 260
Query: 409 AVSGLGKAKGVACTQPRRVAAMSVAQRVAEE 501
+ G + CTQPRR++AMSV++RVA E
Sbjct: 261 IEANRGAFSSIICTQPRRISAMSVSERVAYE 291
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/67 (37%), Positives = 37/67 (55%)
Frame = +3
Query: 504 GWALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLAT 683
G LG+ VGY +R E G T L + T G+LLR + D + +++DE HER +
Sbjct: 293 GEQLGESVGYKVRLEGVKGRDTRLLFCTTGILLRRLLVDRNLRGVTHVIVDEIHERGMNE 352
Query: 684 DILMGVL 704
D L+ +L
Sbjct: 353 DFLLIIL 359
>At1g58050.1 68414.m06579 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1417
Score = 73.7 bits (173), Expect = 1e-13
Identities = 37/83 (44%), Positives = 54/83 (65%)
Frame = +1
Query: 253 FHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKA 432
+ ++L+ R LP+ E K D ++ L +V+ GETGSGKTTQ+PQ+ ++ SG G
Sbjct: 587 YKDMLKTRAALPISEVKKDILQKLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHGGY 646
Query: 433 KGVACTQPRRVAAMSVAQRVAEE 501
+ CTQPR A++VAQRVA+E
Sbjct: 647 CNIICTQPR---AITVAQRVADE 666
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +3
Query: 525 VGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLATDILMGVL 704
V Y +R ++ +T L + T G+LLR+ + D ++ I++DE HER+L D L+ +L
Sbjct: 679 VAYQVRHQNARSDKTRLLFCTTGILLRKLVGDTTLKDVTHIIVDEVHERSLMGDFLLIIL 738
>At1g48650.1 68414.m05445 helicase domain-containing protein
contains similarity to DEIH-box RNA/DNA helicase
[Arabidopsis thaliana] GI:5881579; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00035:
Double-stranded RNA binding motif
Length = 1197
Score = 71.7 bits (168), Expect = 4e-13
Identities = 32/76 (42%), Positives = 51/76 (67%)
Frame = +1
Query: 274 RLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQ 453
R LP ++ K+ ++ + +Q +V+ GETG GKTTQ+PQ+ +E + G + CTQ
Sbjct: 296 RKTLPAYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGATCSIICTQ 355
Query: 454 PRRVAAMSVAQRVAEE 501
PRR++A+SV++RVA E
Sbjct: 356 PRRISAISVSERVAAE 371
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/67 (37%), Positives = 38/67 (56%)
Frame = +3
Query: 504 GWALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHERTLAT 683
G +G+ VGY +R E G T L + T G+LLR + D ++ +++DE HER +
Sbjct: 373 GEQIGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVVVDEIHERGMNE 432
Query: 684 DILMGVL 704
D L+ VL
Sbjct: 433 DFLLIVL 439
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = +1
Query: 283 LPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRR 462
LP ++ K +F+ ++ +Q +V+ GETG GKTTQ+PQ+ +E S G + CTQPRR
Sbjct: 228 LPAFKMKEEFLNSVSQNQVLVVSGETGCGKTTQLPQFILEEEISSLRGADCNIICTQPRR 287
Query: 463 VAAMSVAQRVAEE 501
++A+SVA R++ E
Sbjct: 288 ISAISVASRISAE 300
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Frame = +3
Query: 492 SRRNGWALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMVEQYRVILLDEAHER 671
S G ++G+ VGY IR E QT L + T G+LLR + DP + +L+DE HER
Sbjct: 298 SAERGESIGESVGYQIRLESKRSDQTRLLFCTTGVLLRRLIEDPNLTNVSHLLVDEIHER 357
Query: 672 TLATDILMGVL 704
+ D L+ +L
Sbjct: 358 GMNEDFLLIIL 368
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
similar to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain
Length = 1299
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/81 (39%), Positives = 53/81 (65%)
Frame = +1
Query: 259 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 438
E+ + R LP+ +K+ + ++Q I++ GETG GKTTQ+PQ+ ++ S K
Sbjct: 179 EITKLRSKLPITSFKDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKRETCK- 237
Query: 439 VACTQPRRVAAMSVAQRVAEE 501
+ CTQPRR++AMSV++R++ E
Sbjct: 238 IVCTQPRRISAMSVSERISCE 258
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 492 SRRNGWALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAM---SDPMVEQYRVILLDEA 662
S G ++G+ +GY +R + G + + + T+G+LLR + S V I++DE
Sbjct: 256 SCERGESIGENIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKGSVSSVSDITHIIVDEI 315
Query: 663 HERTLATDILMGVL 704
HER +D ++ ++
Sbjct: 316 HERDCYSDFMLAII 329
>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
[Arabidopsis thaliana]
Length = 1576
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/83 (36%), Positives = 53/83 (63%)
Frame = +1
Query: 253 FHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKA 432
F E+ R LP+ +++ + + ++Q +++ GETG GKTTQ+PQ+ ++ S
Sbjct: 207 FREIFEARSKLPIASFRDAIISAVESNQVVLIAGETGCGKTTQVPQYLLDHMWHSKKEAC 266
Query: 433 KGVACTQPRRVAAMSVAQRVAEE 501
K + CTQPRR++A+SV+ R++ E
Sbjct: 267 K-IICTQPRRISAISVSDRISWE 288
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 492 SRRNGWALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMS---DPMVEQYRVILLDEA 662
S G +G+ VGY +R + G ++ + + T+G+LLR + + V I++DE
Sbjct: 286 SWERGETIGRTVGYKVRLQSEGGRESSVVFCTNGILLRVLIGKGVNSSVPDITHIIVDEI 345
Query: 663 HERTLATDILMGVL 704
HER +D ++ +L
Sbjct: 346 HERDSYSDFMLMIL 359
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Frame = +1
Query: 283 LPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRR 462
LP+ K + + ++ ++VGE G GK++Q+PQ+ +E + CTQPRR
Sbjct: 26 LPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLE-------ANMAPILCTQPRR 78
Query: 463 VAAMSVAQRVAE 498
A ++VA+ VA+
Sbjct: 79 FAVVAVAKMVAK 90
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3
Query: 513 LGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPM-VEQYRVILLDEAHERTLATDI 689
LG E+GY I + + + T G+LL E + + +Y+VI+LDE HER++ +D+
Sbjct: 96 LGGEIGYHIGHSKILTEGSKILFKTAGVLLDEMLDKGLNALKYKVIILDEVHERSVESDL 155
Query: 690 LM 695
++
Sbjct: 156 VL 157
>At1g65560.1 68414.m07437 allyl alcohol dehydrogenase, putative
similar to allyl alcohol dehydrogenase from Nicotiana
tabacum [gi:6692816]; similar to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 350
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 456 KTSGCYVCCSEGSRRNGWALGQEVGYSIRF---EDCSGPQTLLKYMTDGM 596
K GCYV S GS++ L E+GY F E+ L +Y +G+
Sbjct: 181 KLHGCYVVGSAGSKQKVEILKNELGYDEAFNYKEEADLDTALKRYFPEGI 230
>At5g46540.1 68418.m05730 ABC transporter family protein contains Pfam
profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1248
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 304 NDFMRLLNTHQCIVLVGETGSGKTTQI 384
+D +++ Q + LVGE+GSGK+T I
Sbjct: 1024 SDLCLTISSGQTVALVGESGSGKSTVI 1050
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/69 (23%), Positives = 28/69 (40%)
Frame = +1
Query: 364 SGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDGLWVRKLVTAFV 543
SG +IP+ V VS G + + CT + +A + + ++LV+ +
Sbjct: 813 SGIGAKIPKLGVNAQCVSSRGDSVFLGCTNQKSTVKKQMASSSQVQQFSIRKQRLVSTYS 872
Query: 544 LKTVQGHKH 570
L H H
Sbjct: 873 LPDSNSHPH 881
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/69 (23%), Positives = 28/69 (40%)
Frame = +1
Query: 364 SGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDGLWVRKLVTAFV 543
SG +IP+ V VS G + + CT + +A + + ++LV+ +
Sbjct: 786 SGIGAKIPKLGVNAQCVSSRGDSVFLGCTNQKSTVKKQMASSSQVQQFSIRKQRLVSTYS 845
Query: 544 LKTVQGHKH 570
L H H
Sbjct: 846 LPDSNSHPH 854
>At5g03180.1 68418.m00266 zinc finger (C3HC4-type RING finger)
family protein various predicted proteins, Arabidopsis
thaliana ; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 462
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 255 P*AITKTFRTPSLGIQK*FHEITQHSPMYSARRRNRVREDYPDPPVVCRVC 407
P ++ + TPS G +K E+TQ S + + ED P+ VCR+C
Sbjct: 204 PSSVFRVIPTPSRGDEKRL-EMTQASKL---NENDDGGEDVPEEEAVCRIC 250
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +1
Query: 316 RLLNTHQCIVLVGETGSGKTTQI 384
R + ++ ++LVGETG+GKTT +
Sbjct: 662 RSVEYNEPVLLVGETGTGKTTLV 684
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,252
Number of Sequences: 28952
Number of extensions: 329324
Number of successful extensions: 953
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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