Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120122.Seq
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.2  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   6.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 513 GLVVAKTLFAVTAPTVD*LFAHLALLPDTPHE 418
           G+V+     +V +P+V     ++   P TPHE
Sbjct: 698 GMVLPSPSTSVASPSVSVASPYMLQSPLTPHE 729


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 513 GLVVAKTLFAVTAPTVD*LFAHLALLPDTPHE 418
           G+V+     +V +P+V     ++   P TPHE
Sbjct: 590 GMVLPSPSTSVASPSVSVASPYMLQSPLTPHE 621


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 618 SK*KRRIATICCTCGTQSDCYSAVSPTLC 532
           S+ K  +A +  T      CY+ ++P LC
Sbjct: 59  SETKSIVAMVMGTIVNAFSCYTVLAPVLC 87


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 675 LDAEGNPINVTVDTALHRDGVLTDALNVK 761
           L  EGNPI    +T+L       + LN+K
Sbjct: 518 LSLEGNPITTLSNTSLLGAANQLEELNLK 546


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,185
Number of Sequences: 336
Number of extensions: 4104
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)