Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120122.Seq
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920 32 0.58
11_06_0652 - 25906001-25906237,25906345-25906830 30 2.3
01_07_0283 - 42467027-42467056,42467125-42467305,42467659-42467729 29 4.1
11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734... 29 5.4
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 29 5.4
09_02_0156 + 5070962-5072351,5072466-5073139 29 5.4
07_03_1124 + 24157441-24157483,24157989-24158020,24158135-241583... 29 5.4
05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365... 29 5.4
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 29 5.4
04_04_0575 - 26342697-26342885,26343030-26343165,26343279-263437... 29 5.4
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 29 5.4
09_04_0320 - 16656620-16657243,16658198-16659106 28 9.4
06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407 28 9.4
05_01_0030 + 195663-196691 28 9.4
>04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920
Length = 128
Score = 31.9 bits (69), Expect = 0.58
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 191 ARCSAPPQRQNAPPPKARIKQ*LLPSRLCVSYRSL--GMTDLLVALRHLIYPTAIWPRD 21
AR PP RQ PP+A + L+P + Y SL D L +LR + + W R+
Sbjct: 65 ARAVPPPPRQQGEPPRAEALRRLVPGGAGMEYSSLLEETADYLRSLRAQVRLLSDWGRN 123
>11_06_0652 - 25906001-25906237,25906345-25906830
Length = 240
Score = 29.9 bits (64), Expect = 2.3
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Frame = -1
Query: 659 LVGVVVALEPAVHFRSRNAASPRFVARVVRKVIVILPFHQLFAF---DPLAAASLSRKHS 489
+V VV A+ AV RNAAS + +A ++V ILP A D AA L R
Sbjct: 7 IVKVVQAISKAVSTARRNAASCKELAERAQQVAKILPDSNSKAVARGDATAANILRRLRG 66
Query: 488 SLSLPQRSINSSPTSHCCLI-PHMSKSSLPTVSVFMDSSTRV 366
+L + + S + CL P M + + F D + R+
Sbjct: 67 ALDDALQLVESCQSGGGCLSWPLMLVTGDGLAAKFADVNARI 108
>01_07_0283 - 42467027-42467056,42467125-42467305,42467659-42467729
Length = 93
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 585 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTV 710
N W+ V ++++ + DD Q+ +LDAEGN I V V
Sbjct: 49 NDRWKIKVKVTRLWDAVNPTMADDFYGIQMIVLDAEGNSIRVKV 92
>11_06_0685 -
26272928-26273110,26273186-26273257,26273339-26273425,
26273566-26273655,26273741-26273785,26273872-26274054,
26274333-26274392,26274521-26274703,26274779-26274907,
26275083-26275380,26275454-26275608,26275791-26275929,
26276015-26276096,26276167-26276285,26276367-26276494,
26276640-26276813,26276882-26277028
Length = 757
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 585 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTVDTAL 722
N WR V +++ + D+ Q+ +LDAEGN I+V++ L
Sbjct: 14 NDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 61
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 585 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTVDTAL 722
N WR V +++ + D+ Q+ +LDAEGN I+V++ L
Sbjct: 14 NDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 61
>09_02_0156 + 5070962-5072351,5072466-5073139
Length = 687
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 182 SAPPQRQNAPPPKARIKQ*LLPSRLCVSYRSLGMTDLLVALRHLIY 45
S P P +++I + +LP VS S+G LL+ RHL Y
Sbjct: 323 SLPKMPHFEPKARSKILEIILPIATAVSILSVGTIILLLVRRHLRY 368
>07_03_1124 +
24157441-24157483,24157989-24158020,24158135-24158353,
24158553-24158634,24158726-24158898
Length = 182
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -1
Query: 182 SAPPQRQNAPPPK-ARIKQ*LLPSRLCVSYRSLGMTDLLVALRHLIYPTAIWPRDTR 15
+A P APPP A + + S +C+S+ ++GM L++ L HL T +W + R
Sbjct: 53 TATPHGYGAPPPSPAGLATFMGVSFMCLSFVTVGMVHLVLVL-HL---TMLWHMEER 105
>05_06_0126 -
25834129-25834214,25834595-25834658,25836201-25836521,
25836912-25837040,25837118-25837177,25837251-25837548,
25837622-25837776,25837959-25838097,25838185-25838266,
25838337-25838455,25838537-25838664,25838810-25838983,
25839052-25839203,25839393-25839425,25840362-25841331,
25841412-25841537
Length = 1011
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 585 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTVDTAL 722
N WR V +++ + D+ Q+ +LDAEGN I+V++ L
Sbjct: 392 NDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 439
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 585 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTVDTAL 722
N WR V +++ + D+ Q+ +LDAEGN I+V++ L
Sbjct: 193 NDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 240
>04_04_0575 -
26342697-26342885,26343030-26343165,26343279-26343795,
26344286-26344381,26344933-26345011,26345329-26345712
Length = 466
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 191 ARCSAPPQRQ--NAPPPKARIKQ*LLPSR 111
A +APP+RQ APPP AR L PSR
Sbjct: 8 ATTTAPPRRQAEKAPPPPARAGSDLDPSR 36
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 426 GYQAAVRGGRRVNRPLGQ*QRRVFSRQRGRGQWVKGKE 539
G AA R GRR RP G+ +RR + +RG G K +E
Sbjct: 313 GGGAADRPGRRKGRPKGRRRRRGWRDRRGDGVPAKTEE 350
>09_04_0320 - 16656620-16657243,16658198-16659106
Length = 510
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 510 LVVAKTLFAVTAPTVD*LFAHLALLPDTPHEQIFFAHSQRFHGFFDACV 364
++V T+ T P + LF LA L + H ++FH FFD +
Sbjct: 216 MLVRDTVEEATKPNLSDLFPVLAALDLQGRRRRTAVHIRKFHDFFDEII 264
>06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407
Length = 473
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 274 IVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKT 393
+VE + +N+ + + + Y+GGSL P V+ S+++
Sbjct: 31 VVELSFLDNLQVSKAAIQRLFFYDGGSLPPFESVDRSLQS 70
>05_01_0030 + 195663-196691
Length = 342
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 630 RLECHDDTDECQVYILDAEGNPINV 704
+++CH+D + + I DA GNP N+
Sbjct: 31 KVQCHEDDEAALLAIDDALGNPYNL 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,622,504
Number of Sequences: 37544
Number of extensions: 479835
Number of successful extensions: 1460
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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