Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120122.Seq
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_53495| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)                     28   7.2  
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)                     28   9.5  

>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 530 FDPLAAASLSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRV 366
           F   A+ + S      SLP    +S+ +SH  L+   S S+ PT SV   S+  +
Sbjct: 669 FSTTASINFSSSLRQTSLPTLVFSSTGSSHSALLSSNSNSATPTTSVLPSSTVNL 723


>SB_53495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 563 SLCVPH--VQQIVAMRRFYFENVQQARVPRRHRRVSGIHFGR*GQPH*RDRG 712
           SLCV +  V+Q   +RR  F ++   RV  R +RV  +  G+  +   R+RG
Sbjct: 23  SLCVIYQLVKQTFLLRRKKFTDINSDRVNSRKKRVEEVMDGQDAKDEERERG 74


>SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)
          Length = 242

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 310 GYKGYYQAYAYNGGSLDPNTRVEESMKTLTVGKEDLLMWGIRQQCEVGEEL-IDRWGS 480
           G+ G+  A     G + P+  + E  ++  +   +L M  ++Q CE+G +L ID +G+
Sbjct: 19  GFAGFIAAQLAEHG-VPPSNLIVEITESAVMADPELAMGQLQQLCELGVQLSIDDYGT 75


>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
          Length = 779

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = -3

Query: 588 CCTCGTQSDCYSAVSPTL-----CL*PTGRGLVVAKTLFAVTAPTV 466
           C T  T + CYSA   T+     C   T   +  +   ++VT PTV
Sbjct: 287 CATVATNTKCYSATRATMATNTKCYSATCATMATSTKCYSVTCPTV 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,667,343
Number of Sequences: 59808
Number of extensions: 536739
Number of successful extensions: 1568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1568
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)