Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120122.Seq
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of...    31   0.68 
J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein ( C.ele...    31   0.68 
AC024790-2|AAF60638.1|  220|Caenorhabditis elegans Ground-like (...    30   2.1  
AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...    29   2.7  
Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z54216-7|CAI46586.1|  299|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z54216-6|CAB76416.2|  319|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    29   4.8  
U41542-10|AAX88836.1|  486|Caenorhabditis elegans Nuclear hormon...    29   4.8  
U41542-9|AAK39150.3|  542|Caenorhabditis elegans Nuclear hormone...    29   4.8  
AY305836-1|AAR11981.1|  487|Caenorhabditis elegans nuclear recep...    29   4.8  
AF273781-1|AAG15130.1|  508|Caenorhabditis elegans nuclear recep...    29   4.8  

>U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 1, isoform a protein.
          Length = 656

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 267 NHHRGDGLQRKRDYWLQGVLPGVCVQRRLAGSQHTRRRIHENADCGQRRFAH 422
           NHH    L R R  W++ V  GVC++   A +      + +   CG+ R  H
Sbjct: 408 NHHANRNL-RVRSSWVKYVFNGVCLELERAAAWTGAPLLEDTECCGKERCQH 458


>J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein (
           C.elegans fem-1 gene,complete cds. ).
          Length = 656

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 267 NHHRGDGLQRKRDYWLQGVLPGVCVQRRLAGSQHTRRRIHENADCGQRRFAH 422
           NHH    L R R  W++ V  GVC++   A +      + +   CG+ R  H
Sbjct: 408 NHHANRNL-RVRSSWVKYVFNGVCLELERAAAWTGAPLLEDTECCGKERCQH 458


>AC024790-2|AAF60638.1|  220|Caenorhabditis elegans Ground-like (grd
           related) protein 5 protein.
          Length = 220

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 215 FCTDPFSFARCSAPPQRQNAPPPKA 141
           F   P  FA  SAPPQ   APPP+A
Sbjct: 86  FAAQPAQFAVQSAPPQPIVAPPPQA 110


>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 567 FAYHTCNKSWRCGVSTSKMYSRLECHDDTDECQVYILDAEGNPINVT 707
           F  + C+++   G+S + M   L+C ++ D C +   + EG+ I  T
Sbjct: 23  FDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEENEGDSIIFT 69


>Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical
           protein ZK262.6 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -3

Query: 489 FAVTAPTVD*LFAHLALLPDTPHEQIFFAHSQRFHGFFDACVGIQRASVVRIRLVVPLVA 310
           FA     V+ + A LA L + PH  I    S R H      +GI  A ++ + +++    
Sbjct: 18  FATLTQLVEFVVAILAFLMNIPHLFILTRKSMRTHITNSLMIGISIADMITLFMII---- 73

Query: 309 NNHVFV 292
           NN ++V
Sbjct: 74  NNRIYV 79


>Z54216-7|CAI46586.1|  299|Caenorhabditis elegans Hypothetical
           protein T24H10.7b protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -1

Query: 557 ILPFHQLFAFDPLAAASLSRKHSSLSLPQRSINSSP-TSHCCLIPHMSKSSLPTVSV--F 387
           +LP  Q  AF P+  AS S  H   ++    + ++P TS   + P  S + LP V+    
Sbjct: 64  VLPVLQTAAFSPITPASASDMH---TIVMSLLGNTPITSGPSIAPLSSPTLLPLVTSGDL 120

Query: 386 MDSSTRVLGSSEPP 345
            D S ++L SS  P
Sbjct: 121 DDLSMKILASSAIP 134


>Z54216-6|CAB76416.2|  319|Caenorhabditis elegans Hypothetical
           protein T24H10.7a protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -1

Query: 557 ILPFHQLFAFDPLAAASLSRKHSSLSLPQRSINSSP-TSHCCLIPHMSKSSLPTVSV--F 387
           +LP  Q  AF P+  AS S  H   ++    + ++P TS   + P  S + LP V+    
Sbjct: 84  VLPVLQTAAFSPITPASASDMH---TIVMSLLGNTPITSGPSIAPLSSPTLLPLVTSGDL 140

Query: 386 MDSSTRVLGSSEPP 345
            D S ++L SS  P
Sbjct: 141 DDLSMKILASSAIP 154


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 461 NSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLG 360
           N  P SH   +PH S S+   + +++DS   V G
Sbjct: 127 NQIPDSHNKSVPHFSNSNFAPMVLYLDSEEEVRG 160


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 461 NSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLG 360
           N  P SH   +PH S S+   + +++DS   V G
Sbjct: 127 NQIPDSHNKSVPHFSNSNFAPMVLYLDSEEEVRG 160


>U41542-10|AAX88836.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 35, isoform b protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 110 LCVSYRSLGMTDLLVALRHLIYPTA 36
           LCV+YRS+G  D L  L  L  P A
Sbjct: 224 LCVAYRSVGANDALKLLNDLYIPRA 248


>U41542-9|AAK39150.3|  542|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 35, isoform a protein.
          Length = 542

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 110 LCVSYRSLGMTDLLVALRHLIYPTA 36
           LCV+YRS+G  D L  L  L  P A
Sbjct: 280 LCVAYRSVGANDALKLLNDLYIPRA 304


>AY305836-1|AAR11981.1|  487|Caenorhabditis elegans nuclear receptor
           NHR-35 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 110 LCVSYRSLGMTDLLVALRHLIYPTA 36
           LCV+YRS+G  D L  L  L  P A
Sbjct: 225 LCVAYRSVGANDALKLLNDLYIPRA 249


>AF273781-1|AAG15130.1|  508|Caenorhabditis elegans nuclear receptor
           NHR-35 protein.
          Length = 508

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 110 LCVSYRSLGMTDLLVALRHLIYPTA 36
           LCV+YRS+G  D L  L  L  P A
Sbjct: 246 LCVAYRSVGANDALKLLNDLYIPRA 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,765,123
Number of Sequences: 27780
Number of extensions: 384913
Number of successful extensions: 1220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)