Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120122.Seq
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.77 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.4  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 252 SVSLGGVMSKFLILYGPVFICAL 184
           S +LG +MS F++ + P F+ AL
Sbjct: 371 STTLGIIMSAFIVCWLPFFVLAL 393


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 534 KELVKRQNNNHFAYH 578
           K   K QNNNH+  H
Sbjct: 112 KNQYKNQNNNHYTSH 126


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 286 DYNENVIIGYKGYYQAYAYNGGSL 357
           DY + +  GY+G  +  A+NGG +
Sbjct: 229 DYPD-IYSGYEGALRCLAHNGGEI 251


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 286 DYNENVIIGYKGYYQAYAYNGGSL 357
           DY + +  GY+G  +  A+NGG +
Sbjct: 229 DYPD-IYSGYEGALRCLAHNGGEI 251


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 286 DYNENVIIGYKGYYQAYAYNGGSL 357
           DY + +  GY+G  +  A+NGG +
Sbjct: 229 DYPD-IYSGYEGALRCLAHNGGEI 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,408
Number of Sequences: 438
Number of extensions: 4638
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)