Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120122.Seq
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14690.1 68418.m01721 expressed protein predicted protein, Ar...    31   1.1  
At3g51630.1 68416.m05662 protein kinase family protein contains ...    29   4.5  
At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein si...    28   5.9  
At4g02425.1 68417.m00328 expressed protein                             28   5.9  
At1g21450.1 68414.m02682 scarecrow-like transcription factor 1 (...    28   5.9  
At2g03180.1 68415.m00271 hypothetical protein                          28   7.8  

>At5g14690.1 68418.m01721 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 217

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 483 QRRVFSRQRGRGQWVKGKELVKRQNNNHFAYHTCNKSWRCG 605
           +RRV  R++ RG  + G++     NN+H  + T  +  +CG
Sbjct: 98  KRRVIHRRKRRGN-INGEDEFYHHNNHHRRFETAEEGEKCG 137


>At3g51630.1 68416.m05662 protein kinase family protein contains
           Pfam profile: PF00069 protein kinase domain
          Length = 549

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = -1

Query: 611 RNAASPRFVARVVRKVIVILPFHQLFAFDPLAAASLSRKHSSL-SLPQRSINSSPTSHCC 435
           ++  + RFV + +  V   LP  +L A DP  AA+  R  + L  LPQ+    +  ++  
Sbjct: 253 QHTEAQRFVGKCLETVSRRLPAKELLA-DPFLAATDERDLAPLFRLPQQLAIQNLAANGT 311

Query: 434 LIPHMSKSSLPTVSVFMDSSTRVLGSSEPPLY 339
           ++ H+  ++ PT +  M S T  + S +  ++
Sbjct: 312 VVEHLPSTTDPTRTTDM-SITGKMNSEDHTIF 342


>At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein
           similar to beta-galactosidase GI:7939621 from
           [Lycopersicon esculentum]; contains Pfam profile PF01301
           : Glycosyl hydrolases family 35
          Length = 988

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 632 PAVHFRSRNAASPRFVARVVRKVIVILPFHQLFAFD--PLAAASLSRKHSSLSL 477
           P V+FR+ N        R VRK++ ++   +LFA    P+    +  +++++ L
Sbjct: 80  PDVYFRTNNEPFKEHTERYVRKILGMMKEEKLFASQGGPIILGQIENEYNAVQL 133


>At4g02425.1 68417.m00328 expressed protein 
          Length = 262

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 500 RKHSSLSLPQRSINSSPTSHCCLI-PHMSKSSLPTVSVFMDSSTRVLGSS 354
           R+ +S S+  RS + S T  CC I  H + S LP  +V  DSS  + G +
Sbjct: 100 RRRNSRSVSGRSSDRSGTRRCCSIGAHGTCSDLP-FAVGTDSSGELFGEA 148


>At1g21450.1 68414.m02682 scarecrow-like transcription factor 1
           (SCL1) identical to scarecrow-like 1 GB:AAF21043
           GI:6644390 from [Arabidopsis thaliana]
          Length = 593

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +1

Query: 268 ITIVETDYNENVIIGYKGYYQAYAYNGG---SLDPNTRVEESMKTLTVGKEDLLMWGIRQ 438
           +T+VE D N N    +  + +AY Y      SLD  T   ES + + V ++ L    +  
Sbjct: 458 VTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLD-MTLPRESQERMNVERQCLARDIVNI 516

Query: 439 QCEVGEELIDRW 474
               GEE I+R+
Sbjct: 517 VACEGEERIERY 528


>At2g03180.1 68415.m00271 hypothetical protein
          Length = 120

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 459 LFAHLALLPDTPHEQIFFAHSQRFHGFFDACVGIQRASVVRIR 331
           +F   A +  +   +I FAH  R H F D  V I  +S  RI+
Sbjct: 3   IFKEFAKIKKSVEAKIGFAHKDRLHKFLDHHVVIDGSSEQRIQ 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,762,288
Number of Sequences: 28952
Number of extensions: 357763
Number of successful extensions: 1034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)