Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120120.Seq
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    31   0.20 
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    30   0.35 
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    29   0.60 
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.4  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    28   1.8  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    27   3.2  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   4.3  
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    26   5.6  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    26   7.4  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   7.4  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    25   9.8  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 535 FHSFLNCLDF*IKFGQFVGFLDLFIAVYNFGDRSNF-VAFDTFHFYTLIYNICL*GV 368
           F S ++CLDF  +F   VGF    + +  F D S+   AF T +  +L  NI L GV
Sbjct: 504 FESEISCLDFSAQFQIGVGFWSKQVMILTFSDNSSISCAFQT-NVPSLPRNIILEGV 559


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 613 IFRNKADTRQIAAVVFSTLAFIHNRFHPLV---TNFTNKMEFVVTETNDTSIPENPFCLQ 783
           IFR   + R    V     AFI N++ PLV   T++TN     V +TN  S    PF +Q
Sbjct: 93  IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATSWTNGFSIDVQKTNPIS-SYTPFVMQ 151


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +1

Query: 586 LEMTQPLLEIFRNKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPE 765
           L +T   L+ F+N+     I    F  L     +  P++  FT++++ ++ + +D  IP+
Sbjct: 192 LTLTPASLDSFQNRPP--YIGITTFPNLQHCIKKNQPILKQFTSQLQLLIVDESDLVIPD 249

Query: 766 N 768
           +
Sbjct: 250 H 250


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 481 GFLDLFI-AVYNFGDRSNFVAFDTFHF-YTLIYNIC 380
           GF+ + I A+  F DRS  VAF +F +   L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = -1

Query: 791  LVFCKQNGF-SGMLV--SLVSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALF 621
            L+    NGF SG L     +S+ TNS L VKL ++   + C+ +  + ++ ++  ++ L 
Sbjct: 886  LIAMDNNGFASGSLYIDDGISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILG 945

Query: 620  LN 615
            L+
Sbjct: 946  LS 947


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 688 FHPLVTNFTNKMEFVVTETNDTSIPENPFCLQKTRG 795
           FH +   F    +F +  TNDT++ E   CL    G
Sbjct: 398 FHQVGRRFRPGSDFTLATTNDTALLEATLCLSPGTG 433


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 762 GNACVISFSDHKLHFVSKISNK 697
           G+AC +S  + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -1

Query: 782 CKQNGFSGMLVSLVSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALFLNISNS 603
           CKQNG     +  ++ + NSI+ V LV  G     I  N+L+  A I   S L  ++  S
Sbjct: 104 CKQNGLLPRDLRKLNTSINSIVPVILVREG----SILINLLHIRALIKANSVLLFDVYGS 159


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 162 NSKHVFDHFGCSSNYCFNNYV 224
           N   VF+H  CS  Y FNN V
Sbjct: 2   NGLRVFEHVHCSVLYKFNNIV 22


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 726 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 562
           L +++ +S+ KW+E +  K  C K+   N  S     K F + +G+   A +   +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 725 SILLVKLVTSGWNLLCIKANV 663
           S +L  L+  GW ++C  ANV
Sbjct: 19  SCILAWLIEEGWEVICYMANV 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,448
Number of Sequences: 5004
Number of extensions: 58269
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)