Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120120.Seq
         (821 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    29   2.8  
At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi...    29   2.8  
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica...    29   3.7  

>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
            domain-containing protein low similarity to SP|P41410 DNA
            repair protein rhp54 (RAD54 homolog) {Schizosaccharomyces
            pombe}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1256

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 578  SIAMYLLSANLIFRVS*LSKLLRFLNQIRPIRRFFGSFHRCLQFR 444
            S  M++L  NL+FRV    K+L F + I PIR F   F    +++
Sbjct: 1057 SKVMFVL--NLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWK 1099


>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 895

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 673 FIHNRFHPLVTNFTNKMEFVVTETNDTSIPENPF 774
           F  +R    VTNF N++ F   +++ +S P NPF
Sbjct: 17  FSTSRLLSSVTNFRNQLSFSSKDSSSSSAPFNPF 50


>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
            domain-containing protein low similarity to SP|Q9U7E0
            Transcriptional regulator ATRX homolog {Caenorhabditis
            elegans}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1261

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -1

Query: 578  SIAMYLLSANLIFRVS*LSKLLRFLNQIRPIRRFFGSFHRCLQFR 444
            S  M++L  NLIFRV    K+L F + I PIR F   F    +++
Sbjct: 1063 SKVMFVL--NLIFRVVKREKILIFCHNIAPIRMFTELFENIFRWQ 1105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,949,718
Number of Sequences: 28952
Number of extensions: 294918
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)