Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120119.Seq
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   157   2e-39
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   157   2e-39
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    28   1.0  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    28   1.0  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   1.8  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.3  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   5.4  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   9.4  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   9.4  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  157 bits (380), Expect = 2e-39
 Identities = 72/85 (84%), Positives = 77/85 (90%)
 Frame = +2

Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 433
           FGIRRNEKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKY
Sbjct: 57  FGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKY 116

Query: 434 DPSIGIYGLDFYVVLGRPGFNVAHR 508
           DPSIGIYG+DFYVV+ RPG  VA R
Sbjct: 117 DPSIGIYGMDFYVVMDRPGMRVARR 141



 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = +3

Query: 93  DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 251
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIR 55



 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +1

Query: 508 RRKT--GKVGFPHRLTKEDAMKWFQQKYDGIIL 600
           RRK   G+VG+ H++  ED + WF+QKYD ++L
Sbjct: 140 RRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  157 bits (380), Expect = 2e-39
 Identities = 72/85 (84%), Positives = 77/85 (90%)
 Frame = +2

Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 433
           FGIRRNEKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKY
Sbjct: 57  FGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKY 116

Query: 434 DPSIGIYGLDFYVVLGRPGFNVAHR 508
           DPSIGIYG+DFYVV+ RPG  VA R
Sbjct: 117 DPSIGIYGMDFYVVMDRPGMRVARR 141



 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = +3

Query: 93  DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 251
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIR 55



 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +1

Query: 508 RRKT--GKVGFPHRLTKEDAMKWFQQKYDGIIL 600
           RRK   G+VG+ H++  ED + WF+QKYD ++L
Sbjct: 140 RRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 463 LLRRTWPARFQRSTQRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSKAK*N 621
           ++ +T PA+ +   QRRK GK     +  K+ ++K   +  +  + N KAK N
Sbjct: 472 VINQTGPAK-KTPVQRRKDGKFAKSTKRKKQKSLKPDTENQESSVKNKKAKSN 523


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -1

Query: 517 SYASVCYVETWPAKYDVKVQSINSN*GIVLDTQVNVFLNTEAKITRGGEVVT 362
           SYASVC ++ WP      +  ++ N    L+  ++   +  A +T+G E+++
Sbjct: 20  SYASVCVMKKWPIIATNVIDEVSRNISKALEAGMS---DKAAYVTQGKEIIS 68


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 126 YEDSALHF*NYPSEPSSPFYLSST 55
           YE+ + +  +Y S+PSSP Y+SS+
Sbjct: 153 YEEDSYNNYDYTSDPSSPNYISSS 176


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 246 LYT*PWKIQAVVL*VAPTPWRHESACHRIHQHI 148
           +Y   W I A +L V P PWR+ S+   + + I
Sbjct: 127 IYPLLWVITAFILIVFPFPWRYRSSQRGLRKSI 159


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 150 CVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSLVSVVMKRLLSIVQSEELKQKKSLR 329
           CV  S   +  +  VL  +       SKA    RS V    K  + IVQ+   K +++LR
Sbjct: 691 CVESSDKSIKASVSVLPDIYEDSDAMSKASKETRSEVLECSKVRVYIVQNRIYKLEEALR 750


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 442 NWNLWTGLLRRTWPARFQRSTQR 510
           NW+    L R  WP  F RS+Q+
Sbjct: 644 NWSSIGRLRRSEWPRSFNRSSQQ 666


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -3

Query: 575 WNHFIASSFVRRW 537
           W+H+I++SF+ +W
Sbjct: 519 WSHYISASFLSKW 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,368
Number of Sequences: 5004
Number of extensions: 55741
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)