Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120119.Seq
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 137 6e-33
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 137 6e-33
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 96 2e-20
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 82 3e-16
02_02_0196 + 7685933-7685961,7686086-7686284 57 1e-08
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 33 0.26
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 32 0.45
12_01_0263 + 1925924-1926319,1926565-1927143 29 3.2
11_01_0265 + 2007195-2007590,2007836-2008414 29 3.2
11_06_0280 + 21875166-21875470,21876450-21876645,21878270-21878887 29 4.2
08_02_0286 - 15326876-15328135 28 5.6
08_01_0817 - 7941225-7941330,7941456-7942384,7943498-7943574,794... 28 7.4
03_04_0079 + 17102623-17102644,17102794-17102897,17104461-171046... 28 7.4
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 137 bits (332), Expect = 6e-33
Identities = 65/85 (76%), Positives = 71/85 (83%)
Frame = +2
Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 433
FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKY
Sbjct: 59 FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKY 118
Query: 434 DPSIGIYGLDFYVVLGRPGFNVAHR 508
DPS GIYG+DFYVVL R G+ VA R
Sbjct: 119 DPSTGIYGMDFYVVLERAGYRVARR 143
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = +3
Query: 105 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 254
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRS
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRS 58
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +1
Query: 484 ARFQRSTQRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSKAK*NXS 627
A ++ + +RR +VG HR+TKEDAMKWFQ KY+G+ILN KA+ N S
Sbjct: 136 AGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN-KAQANTS 182
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 137 bits (332), Expect = 6e-33
Identities = 65/85 (76%), Positives = 71/85 (83%)
Frame = +2
Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 433
FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKY
Sbjct: 59 FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKY 118
Query: 434 DPSIGIYGLDFYVVLGRPGFNVAHR 508
DPS GIYG+DFYVVL R G+ VA R
Sbjct: 119 DPSTGIYGMDFYVVLERAGYRVARR 143
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = +3
Query: 105 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 254
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRS
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRS 58
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +1
Query: 484 ARFQRSTQRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSKAK*NXS 627
A ++ + +RR +VG HR+TKEDAMKWFQ KY+G+ILN KA+ N S
Sbjct: 136 AGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN-KAQANTS 182
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 95.9 bits (228), Expect = 2e-20
Identities = 46/59 (77%), Positives = 50/59 (84%)
Frame = +2
Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 430
FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 85 FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
Score = 81.8 bits (193), Expect = 4e-16
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = +3
Query: 105 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 254
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRS
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRS 84
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = +3
Query: 105 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 254
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRS
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRS 58
Score = 74.1 bits (174), Expect = 9e-14
Identities = 44/87 (50%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNF--SATGNFGFGIQEHIDLGI 427
FGIRRNEKIA + TVRG KA ++LE GLK+ DN S T + +
Sbjct: 59 FGIRRNEKIACYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCF 115
Query: 428 KYDPSIGIYGLDFYVVLGRPGFNVAHR 508
+YDPS GIYG+DFYVVL R G+ VA R
Sbjct: 116 RYDPSTGIYGMDFYVVLERAGYRVARR 142
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +1
Query: 484 ARFQRSTQRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSKAK*NXS 627
A ++ + +RR +VG HR+TKEDAMKWFQ KY+G+ILN KA+ N S
Sbjct: 135 AGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN-KAQANTS 181
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +1
Query: 484 ARFQRSTQRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSKAK*NXS 627
A ++ + +RR +VG HR+TKEDAMKWFQ KY+G+ILN KA+ N S
Sbjct: 29 AGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN-KAQANTS 75
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +2
Query: 431 YDPSIGIYGLDFYVVLGRPGFNVAHR 508
YDPS GIYG+DFYVVL R G+ VA R
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARR 36
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 272 EKIAVHCTVRGAKAEEILERGLK 340
EKIA + TVRG KA ++LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 272 EKIAVHCTVRGAKAEEILERGLK 340
EKIA + TVRG KA ++LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>12_01_0263 + 1925924-1926319,1926565-1927143
Length = 324
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +2
Query: 215 TACIFQG*VYSAVFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFG 394
T+C+ + V S F I E I HC + +KA++ L L+V+E ++ G G
Sbjct: 255 TSCLKEVHVISTAFRIENIEAIMTHCQSQESKAKDQL-LALQVKEQMHSCESKEIHGLLG 313
Query: 395 FGI 403
GI
Sbjct: 314 SGI 316
>11_01_0265 + 2007195-2007590,2007836-2008414
Length = 324
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +2
Query: 215 TACIFQG*VYSAVFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFG 394
T+C+ + V S F I E I HC + +KA++ L L+V+E ++ G G
Sbjct: 255 TSCLKEVHVISTAFRIENIEAIMTHCQSQESKAKDQL-LALQVKEQMHSCESKEIHGLLG 313
Query: 395 FGI 403
GI
Sbjct: 314 SGI 316
>11_06_0280 + 21875166-21875470,21876450-21876645,21878270-21878887
Length = 372
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 344 REYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRG 511
RE EL+R S+ G +E +D G+ DP+ G Y Y + RPG + ++G
Sbjct: 54 REDELKRRWISSV--LGMAGRE-VDAGV-VDPADGFYYRSVYPSMTRPGISATYKG 105
>08_02_0286 - 15326876-15328135
Length = 419
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 266 RNEKIAVHCTVR-GAKAEEILERGLKVREYELRR 364
R +++ V C V A A+E+L RG + + ELRR
Sbjct: 147 RGDRLVVECAVLLAADADEVLRRGPRPLDDELRR 180
>08_01_0817 -
7941225-7941330,7941456-7942384,7943498-7943574,
7944911-7945286
Length = 495
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 451 LWTGLLRRTWPARFQRS-TQRRKTGKVGFPHR 543
LW L RR W AR + +RR+ G G P R
Sbjct: 46 LWEALCRRDWGARATAALAERRRRGGGGVPWR 77
>03_04_0079 +
17102623-17102644,17102794-17102897,17104461-17104660,
17104864-17105005,17105024-17105290
Length = 244
Score = 27.9 bits (59), Expect = 7.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 201 APTPWRHESACHRIHQHICSS 139
APTP+ ++ A H + H+C++
Sbjct: 63 APTPYENDKALHFLRHHLCAT 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,083,010
Number of Sequences: 37544
Number of extensions: 354729
Number of successful extensions: 969
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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