Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120119.Seq
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)              164   5e-41
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               30   1.9  
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               29   4.3  
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_27| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   4.3  
SB_58040| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   28   7.5  
SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_37664| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score =  164 bits (399), Expect = 5e-41
 Identities = 75/95 (78%), Positives = 85/95 (89%)
 Frame = +2

Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 433
           FGIRRNEKI+VHCTVRG KAEEILE+GLKV+EYEL +  FSATGNFGFGIQEHIDLGIKY
Sbjct: 52  FGIRRNEKISVHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKY 111

Query: 434 DPSIGIYGLDFYVVLGRPGFNVAHRGVRQEKWDFP 538
           DPSIGIYG+DF+VVLGRPGFN++ R  +Q +  FP
Sbjct: 112 DPSIGIYGMDFFVVLGRPGFNISKRKHKQGRVGFP 146



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 45/50 (90%), Positives = 46/50 (92%)
 Frame = +3

Query: 105 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 254
           N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS
Sbjct: 2   NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 51



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +1

Query: 490 FQRSTQRRKTGKVGFPHRLTKEDAMKWFQQK 582
           F  S ++ K G+VGFPHRLTK+DAMKWFQQK
Sbjct: 131 FNISKRKHKQGRVGFPHRLTKDDAMKWFQQK 161


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 166 VTG*LVPPRCWSNSQDNSLYFP 231
           VT  LVPP  W+ SQD  +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/51 (43%), Positives = 27/51 (52%)
 Frame = +3

Query: 240 YTVRSLVSVVMKRLLSIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVIL 392
           +TV SLV  V+K LL        K K SLR     E++N GVTT  P  +L
Sbjct: 60  FTVNSLVVCVVKELLGSKHGHR-KVKLSLR----PEDVNAGVTTIVPGFVL 105


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -2

Query: 399 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPK 253
           P P++P +  L S + S S  +KP+SRI ++L+  ++Q   ++  + +P+
Sbjct: 149 PLPRIPTSPSLVSLQVSPSYPYKPVSRIPTSLSLVSLQAPPLYPYKPLPR 198


>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 403

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 399 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIFSLRRIPK 253
           P P++P +  L    +  L T+KPL RIS++L+  ++Q +  +  + +P+
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPYKPLPR 352


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 195 TPWRHESACHRIHQHICSSKAF*YEDSALHF*NYPSEPSSPFYLSST 55
           T  R +S   R  +  CS+K+  +   A HF N+   P  PFY S T
Sbjct: 565 TSRRFQSRPQRCPRRRCSNKSLSFVGRA-HFSNFRVTPKMPFYRSMT 610


>SB_27| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 475 TWPARFQRSTQRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 600
           TW  R ++S ++RK   +  P  L+  D+M WF      ++L
Sbjct: 37  TWHLRRRQSLRKRKRA-MNVPEVLSPTDSMPWFDTVLSSVLL 77


>SB_58040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 126 IRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSLVSVVMKR 278
           IR++CL I   E G    + AK  +Q++  QP+  K  Y V + +    K+
Sbjct: 6   IRRICLEIEEKEKGQETQKQAKKEDQVSEPQPI--KITYDVMAALDAGKKK 54


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 457 TGLLRRTWPARFQRSTQRRKTGKVGFPHRLTKEDAMKWFQQ 579
           T  ++ TW AR  R+   +K    GF  +L  +    WFQQ
Sbjct: 102 TAQVQSTWRARILRTNVGKKFLSPGFLVQLAPQVYQDWFQQ 142


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 359 RRDNFSATGNFGFGIQEHIDLGIKYD 436
           ++ ++SATG+F   ++EHI  G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331


>SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 263 RRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNF 391
           RR +        RGA A EI ++G+K +  E RR+     G +
Sbjct: 147 RREDTFPKEKEARGANANEISKQGVKEKARETRREIVRQEGKY 189


>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 165 GDRLTRAAKVLEQLTGQQPVFSKARY 242
           G R TR A   +QLT  + VFSK  Y
Sbjct: 66  GSRRTRTAFTHQQLTALEKVFSKTHY 91


>SB_37664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 467 YVVLGRPGFNVAHRGVRQEKWDFPTASQRKML*SGSNRNMMVSYLIAKQSKIXVNKSNKT 646
           Y V   PG++   +    E+++FP  +  + L S          +I   SK+ + K NK+
Sbjct: 186 YKVPMAPGYSAEMKSQSLEEYEFPDGAVWRRLISEGRFKETAMTMITPSSKLTLTKGNKS 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,630,666
Number of Sequences: 59808
Number of extensions: 416668
Number of successful extensions: 1084
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)