Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120119.Seq
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   154   4e-38
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   152   2e-37
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    30   1.2  
Z75527-2|CAA99775.2|  636|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF370361-1|AAK52514.1|  636|Caenorhabditis elegans putative tran...    30   1.6  
AB096001-1|BAE53417.1|  676|Caenorhabditis elegans bHLH-PAS fact...    30   1.6  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    29   2.8  
AF067943-3|AAC17664.1|  266|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  154 bits (374), Expect = 4e-38
 Identities = 70/85 (82%), Positives = 77/85 (90%)
 Frame = +2

Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 433
           FGIRRNEKIAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKY
Sbjct: 67  FGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKY 126

Query: 434 DPSIGIYGLDFYVVLGRPGFNVAHR 508
           DPSIGIYG+DFYVVL R G  +A R
Sbjct: 127 DPSIGIYGMDFYVVLDRAGRRIAKR 151



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 45/52 (86%), Positives = 49/52 (94%)
 Frame = +3

Query: 99  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 254
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRT 66



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +1

Query: 505 QRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSKAK 615
           +RR  G+VG  HR+ +E+++KWFQQKYDGIIL  K K
Sbjct: 151 RRRAPGRVGPSHRVEREESIKWFQQKYDGIILPPKPK 187


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  152 bits (369), Expect = 2e-37
 Identities = 69/85 (81%), Positives = 76/85 (89%)
 Frame = +2

Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 433
           FGIRRNEKIAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKY
Sbjct: 67  FGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKY 126

Query: 434 DPSIGIYGLDFYVVLGRPGFNVAHR 508
           DP IGIYG+DFYVVL R G  V+ R
Sbjct: 127 DPGIGIYGMDFYVVLNRNGVRVSKR 151



 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 45/51 (88%), Positives = 48/51 (94%)
 Frame = +3

Query: 102 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 254
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRT 66



 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 23/39 (58%), Positives = 29/39 (74%)
 Frame = +1

Query: 499 STQRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSKAK 615
           S +RR  G++G  HR+ KE+ +KWFQQKYDGIIL  K K
Sbjct: 149 SKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIILPPKPK 187


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 293 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 451
           ++R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>Z75527-2|CAA99775.2|  636|Caenorhabditis elegans Hypothetical
           protein C15C8.2 protein.
          Length = 636

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 536 GNPTFPVLRLCVLR*NLAGQVRRKSPVHKFQL-RDRT*YPSQCVLEYRSQN 387
           G  TFP  R+ + R NLA   +R+   HKF L + R   P++   +  +QN
Sbjct: 221 GAATFPEERVFICRLNLARTAKRQLQYHKFVLFQGRYIQPAEFYQQLNAQN 271


>AF370361-1|AAK52514.1|  636|Caenorhabditis elegans putative
           transcription factor C15C8.2protein.
          Length = 636

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 536 GNPTFPVLRLCVLR*NLAGQVRRKSPVHKFQL-RDRT*YPSQCVLEYRSQN 387
           G  TFP  R+ + R NLA   +R+   HKF L + R   P++   +  +QN
Sbjct: 221 GAATFPEERVFICRLNLARTAKRQLQYHKFVLFQGRYIQPAEFYQQLNAQN 271


>AB096001-1|BAE53417.1|  676|Caenorhabditis elegans bHLH-PAS factor
           protein.
          Length = 676

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 536 GNPTFPVLRLCVLR*NLAGQVRRKSPVHKFQL-RDRT*YPSQCVLEYRSQN 387
           G  TFP  R+ + R NLA   +R+   HKF L + R   P++   +  +QN
Sbjct: 221 GAATFPEERVFICRLNLARTAKRQLQYHKFVLFQGRYIQPAEFYQQLNAQN 271


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 394  AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 257
            AK+ + G ++ PQ  FS+F+  +  FF  +    T+  N  I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 355 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 266
           ++  DF+  +KDFF C   SD T  S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330


>AF067943-3|AAC17664.1|  266|Caenorhabditis elegans Hypothetical
           protein F59B1.4 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 289 MDSNLFITTDTKDRTVYLALENTGCCPVSCSNTLAARVSLSPD-SPTHMFKQSFLI 125
           MD+ ++ T    DRT+ L L N   C  +  N LA  + +      T +FK + LI
Sbjct: 1   MDNRVYATVHLTDRTLQLYLTNIFNCLATPVNFLAFYLIIKHSRRETKLFKYTLLI 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,614,649
Number of Sequences: 27780
Number of extensions: 310495
Number of successful extensions: 788
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)