Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120119.Seq
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 140 7e-34
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 140 7e-34
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 140 7e-34
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 140 7e-34
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 140 7e-34
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.013
At4g29950.2 68417.m04261 microtubule-associated protein identica... 30 1.5
At4g29950.1 68417.m04260 microtubule-associated protein identica... 30 1.5
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 2.0
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 3.5
At4g26330.1 68417.m03786 subtilase family protein contains simil... 28 6.1
At4g14280.1 68417.m02201 hypothetical protein 28 6.1
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 27 8.1
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 8.1
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 8.1
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 140 bits (339), Expect = 7e-34
Identities = 66/85 (77%), Positives = 72/85 (84%)
Frame = +2
Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 433
FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKY
Sbjct: 59 FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 118
Query: 434 DPSIGIYGLDFYVVLGRPGFNVAHR 508
DPS GIYG+DFYVVL RPG+ VA R
Sbjct: 119 DPSTGIYGMDFYVVLERPGYRVARR 143
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/50 (78%), Positives = 45/50 (90%)
Frame = +3
Query: 105 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 254
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRS
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRS 58
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +1
Query: 490 FQRSTQRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 603
++ + +RR +VG HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 138 YRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 175
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 140 bits (339), Expect = 7e-34
Identities = 66/85 (77%), Positives = 72/85 (84%)
Frame = +2
Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 433
FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKY
Sbjct: 49 FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 108
Query: 434 DPSIGIYGLDFYVVLGRPGFNVAHR 508
DPS GIYG+DFYVVL RPG+ VA R
Sbjct: 109 DPSTGIYGMDFYVVLERPGYRVARR 133
Score = 80.6 bits (190), Expect = 8e-16
Identities = 38/48 (79%), Positives = 44/48 (91%)
Frame = +3
Query: 111 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 254
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRS
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRS 48
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +1
Query: 490 FQRSTQRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 603
++ + +RR +VG HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 128 YRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 165
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 140 bits (339), Expect = 7e-34
Identities = 66/85 (77%), Positives = 72/85 (84%)
Frame = +2
Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 433
FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKY
Sbjct: 59 FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 118
Query: 434 DPSIGIYGLDFYVVLGRPGFNVAHR 508
DPS GIYG+DFYVVL RPG+ VA R
Sbjct: 119 DPSTGIYGMDFYVVLERPGYRVARR 143
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/50 (78%), Positives = 45/50 (90%)
Frame = +3
Query: 105 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 254
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRS
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRS 58
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +1
Query: 490 FQRSTQRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 603
++ + +RR +VG HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 138 YRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 175
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 140 bits (339), Expect = 7e-34
Identities = 66/85 (77%), Positives = 72/85 (84%)
Frame = +2
Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 433
FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKY
Sbjct: 59 FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 118
Query: 434 DPSIGIYGLDFYVVLGRPGFNVAHR 508
DPS GIYG+DFYVVL RPG+ VA R
Sbjct: 119 DPSTGIYGMDFYVVLERPGYRVARR 143
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/50 (78%), Positives = 45/50 (90%)
Frame = +3
Query: 105 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 254
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRS
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRS 58
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +1
Query: 490 FQRSTQRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 603
++ + +RR +VG HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 138 YRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 175
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 140 bits (339), Expect = 7e-34
Identities = 66/85 (77%), Positives = 72/85 (84%)
Frame = +2
Query: 254 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 433
FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKY
Sbjct: 49 FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 108
Query: 434 DPSIGIYGLDFYVVLGRPGFNVAHR 508
DPS GIYG+DFYVVL RPG+ VA R
Sbjct: 109 DPSTGIYGMDFYVVLERPGYRVARR 133
Score = 80.6 bits (190), Expect = 8e-16
Identities = 38/48 (79%), Positives = 44/48 (91%)
Frame = +3
Query: 111 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRS 254
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRS
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRS 48
Score = 53.2 bits (122), Expect = 1e-07
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +1
Query: 490 FQRSTQRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILN 603
++ + +RR +VG HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 128 YRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILN 165
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +2
Query: 317 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 481
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At4g29950.2 68417.m04261 microtubule-associated protein identical
to microtubule-associated protein GI:5032258 from
[Arabidopsis thaliana]; similar to TBC1 domain family
member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
Pfam profile PF00566: TBC domain
Length = 703
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -1
Query: 352 IFSDFQTPLKDF-FCFSSSDCTMDSNLFITTDTKDRTVYLALENTGCCPVSCSNTLAARV 176
+FSD +PL+D + + SD + +SNLF KDR + +S ++ V
Sbjct: 473 LFSDPNSPLRDSNYIENDSDSSNESNLFPDETVKDRETSVV---DSPLSISSQPSMEFIV 529
Query: 175 SLSPDSPT 152
SLS D T
Sbjct: 530 SLSKDQET 537
>At4g29950.1 68417.m04260 microtubule-associated protein identical
to microtubule-associated protein GI:5032258 from
[Arabidopsis thaliana]; similar to TBC1 domain family
member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
Pfam profile PF00566: TBC domain
Length = 828
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -1
Query: 352 IFSDFQTPLKDF-FCFSSSDCTMDSNLFITTDTKDRTVYLALENTGCCPVSCSNTLAARV 176
+FSD +PL+D + + SD + +SNLF KDR + +S ++ V
Sbjct: 598 LFSDPNSPLRDSNYIENDSDSSNESNLFPDETVKDRETSVV---DSPLSISSQPSMEFIV 654
Query: 175 SLSPDSPT 152
SLS D T
Sbjct: 655 SLSKDQET 662
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +3
Query: 126 IRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSLVSVVMKRLLSIVQSEE 305
I +L L + + ++ LEQ F K T++++ SV + R L+ +
Sbjct: 702 IEQLQLLLSNSQKIEKPLSKGNALEQPDDPVSYFMKFLSTLQNIPSVSLFRSLNEADEKA 761
Query: 306 LKQKKSLRGV*KSENMNCGVTTSP 377
K+ + E NCG++T P
Sbjct: 762 FKELQETESKLLKEERNCGLSTDP 785
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 314 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFYVVL 478
E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL V L
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 393 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWT 283
P++ V K + +SY +TFKP S + WT
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWT 723
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 411 TLTWVSSTIPQLEFMDWTFTS 473
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 360 GVTTSPPRVILASVF--KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 491
G+ + R+ +F + TLTW +S +P L + W + S ++
Sbjct: 182 GLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 104 KCNAESSYQKALLEHMCW 157
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 104 KCNAESSYQKALLEHMCW 157
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,784,449
Number of Sequences: 28952
Number of extensions: 289805
Number of successful extensions: 858
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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