Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120117.Seq
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    94   2e-20
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    27   2.3  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   7.1  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   7.1  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   7.1  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   9.4  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   9.4  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 41/54 (75%), Positives = 48/54 (88%)
 Frame = +2

Query: 92  AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 253
           AVIK  DMSE+MQQ+A+  A QA+EKF IEKDIAAFIK+EFDKK++PTWHCIVG
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVG 55



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 250 GSNFGSYVTHETRHFIYFYLGQVAILLFKSG 342
           G NFGS+VTHE+RHFIYFYLG VA LLFKSG
Sbjct: 55  GRNFGSFVTHESRHFIYFYLGTVAFLLFKSG 85


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 441 PQPEPRMRICKGYPSDNTASAA-NKKIEVMLNGLTALKEQYSH 316
           PQ EP     + Y   N   A  N+++EV+ + L+ LKEQ +H
Sbjct: 307 PQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITH 349


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 53  KQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE 181
           +QKQ + +   RK   K   M+E+ +    +   + L K N+E
Sbjct: 527 QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVE 569


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 164 RALELHSQQHLAASLRSCQHSL*LLCDHTSCL-GFVFAS 51
           ++L L + QH+   L SC ++L +L  H  CL  F++ S
Sbjct: 39  KSLHLMTSQHIFKCLSSCNYALSIL--HNICLASFLYLS 75


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 402 PSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASL 280
           P+DN A+     IE +L+G+T  KE+  H+ ++     ASL
Sbjct: 160 PNDNLAAQYQFWIERLLHGITE-KEELQHIYKILTLTPASL 199


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 204 LINAAMSFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILSWVCFC 55
           L N   SF + N   +      A+ C+SSL+       L    L W+C C
Sbjct: 139 LKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKC 188


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +2

Query: 56  QKQTQD--KMCDRKAVIKNADMSEEMQQDAVDCATQALEKF 172
           +K+T +  KM   K ++K AD+S  +Q+D +   T+ LEK+
Sbjct: 521 EKKTDEPVKMRKVKKLVKVADLSVSVQEDRL--PTEVLEKY 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,051
Number of Sequences: 5004
Number of extensions: 59067
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)