Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120117.Seq
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           80   2e-15
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     69   4e-12
01_06_0783 + 31975261-31975398,31975583-31975726                       56   2e-08
01_05_0324 - 20946774-20946935,20947301-20947780                       55   7e-08
02_04_0361 - 22359278-22359439,22362291-22362728                       47   1e-05
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504...    32   0.60 
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97...    28   7.4  

>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 35/55 (63%), Positives = 42/55 (76%)
 Frame = +2

Query: 89  KAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 253
           K  +K+ADM EEM+Q+A D A  A EK  +EKDIA +IKKEFDK + PTWHCIVG
Sbjct: 46  KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVG 100


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = +2

Query: 77  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 253
           +   K  IK+A+M EEM+Q+A D    A EK  +EKDI  +I KEFDK + PTWHCIVG
Sbjct: 54  LAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYI-KEFDKNHGPTWHCIVG 111


>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
 Frame = +2

Query: 77  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKYNPTWHCIV 250
           M + KA++++ DM  +MQ  A+  A +AL++F++   + IAA IKKEFD  + P W C+V
Sbjct: 1   MLEGKAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVV 60

Query: 251 G 253
           G
Sbjct: 61  G 61



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 250 GSNFGSYVTHETRHFIYFYLGQVAILLFK 336
           G++FG Y TH    FIYF LG +  L+FK
Sbjct: 61  GASFGCYFTHSKGSFIYFKLGALRFLVFK 89


>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
 Frame = +2

Query: 107 ADMSEEMQQDAVDCATQA---LEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 253
           ADMS  MQ  A  CA ++   L+KF+  + +A  +KKEFDK Y PTWHCIVG
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVG 175



 Score = 35.5 bits (78), Expect = 0.049
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +1

Query: 250 GSNFGSYVTHETRHFIYFYLGQVAILLFKS 339
           G+++GS+VTH    F+YF + ++ ++LFK+
Sbjct: 175 GTSYGSFVTHARGCFLYFSMDKIIVMLFKT 204


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = +2

Query: 53  KQKQTQDKMCDRKAVIK--NADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDK 220
           K+K+ +    +RK  ++   ADM   MQ+ AV  A  A+        K +A  +KKEFD 
Sbjct: 91  KEKEMEKGKEERKVSVRVRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDA 150

Query: 221 KYNPTWHCIVG 253
            Y P WHCIVG
Sbjct: 151 TYGPAWHCIVG 161



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +1

Query: 250 GSNFGSYVTHETRHFIYFYLGQVAILLFKS 339
           G+ FGSYVTH    F+YF + +V +LLF++
Sbjct: 161 GTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190


>12_01_0612 -
           5044639-5044858,5045010-5045167,5045440-5045684,
           5046006-5046294,5047540-5048561,5049320-5049389
          Length = 667

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 35  EFVHLSKQKQTQDKMCDRKA-VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKE 211
           EF  L +++  +   CD  +   +N  + EE  Q  +DC  +  E+F+ E+D    IK  
Sbjct: 567 EFERLLQEELARAIECDVDSETTENCKLREEQIQRIIDCQVKDAEEFDAEQD--ELIKTH 624

Query: 212 FDKKYN 229
            +KK N
Sbjct: 625 EEKKAN 630


>06_01_0125 +
           970746-970967,971126-971226,971897-972026,972108-972333,
           972400-972502,972519-972594,972710-973333
          Length = 493

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 56  QKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEK 169
           Q + ++K C  KA +   + S + +QD +D   Q  EK
Sbjct: 259 QHRKRNKFCGHKAAVDRLNESGKNEQDRIDDVVQMYEK 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,318,462
Number of Sequences: 37544
Number of extensions: 383416
Number of successful extensions: 863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)