Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120117.Seq
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)               118   4e-27
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   3e-06
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)                    29   3.3  
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 

>SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)
          Length = 89

 Score =  118 bits (285), Expect = 4e-27
 Identities = 52/59 (88%), Positives = 57/59 (96%)
 Frame = +2

Query: 77  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 253
           M +RKAVIKNADM+E+MQ DA++CATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG
Sbjct: 1   MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 59



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = +1

Query: 250 GSNFGSYVTHETRHFIYFYLGQVAILLFKSG 342
           G NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 59  GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = +2

Query: 95  VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAA-FIKKEFDKKYNPTWHCIVG 253
           +I+ +DM++EM+ +A++    A EKF+   + AA  IK+  DKK+  +WH +VG
Sbjct: 26  LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFGASWHAVVG 79



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 250 GSNFGSYVTHETRHFIYFYLGQVAILL 330
           G  FG  +THE R+ +Y + G+   +L
Sbjct: 79  GEGFGFEITHEVRNLLYMFFGKYTTIL 105


>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
          Length = 344

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -3

Query: 523 HSLENVHTSTSLASSCHTLAASYLWECTTARASHENLQRLSI**YCVRC*QKNR 362
           HS EN  T   L   CH   + Y  +C   R S E+   L +  YC  C +K R
Sbjct: 171 HS-ENKMTGNKLVE-CHECHSHYHQKCHEPRVSDEDANDLRLVWYCTLCIKKMR 222


>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 544 KTVHPLSHSLENV-HTSTSLASSCHTLAASYLWECTTARASHE 419
           +T H +SH+L    H + +    CH L  +Y +E   A+ SHE
Sbjct: 868 QTSHEMSHALHTYRHRAQTSHEMCHAL-YTYAYELHRAQTSHE 909


>SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1239

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 235 LALHRGSNFGSYVTHETRHFIYFYLGQVAILLFKSG*T 348
           L  HR    GSY      H I+ Y G++  +L+++  T
Sbjct: 837 LTAHRSPVLGSYYGDPLPHIIHLYWGRITEILYRTSFT 874


>SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 447 NVPQPEPRMRICKGYPSDNTASAANKKIEVMLNGLT 340
           N P  EP + +  G P DNT  ++  KI V  NG +
Sbjct: 7   NRPVHEP-LAVLSGVPKDNTIPSSAPKISVSKNGFS 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,848,064
Number of Sequences: 59808
Number of extensions: 462690
Number of successful extensions: 1028
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)