Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120117.Seq
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light ch...   122   4e-28
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    59   4e-09
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    53   2e-07
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    45   5e-05
AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical ...    45   5e-05
AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical ...    30   1.7  
AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D prot...    30   1.7  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    28   6.7  
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    28   8.8  

>U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light chain
           protein 1 protein.
          Length = 89

 Score =  122 bits (293), Expect = 4e-28
 Identities = 53/59 (89%), Positives = 58/59 (98%)
 Frame = +2

Query: 77  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 253
           M DRKAVIKNADMS++MQQDA+DCATQALEK+NIEKDIAA+IKKEFDKKYNPTWHCIVG
Sbjct: 1   MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVG 59



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = +1

Query: 250 GSNFGSYVTHETRHFIYFYLGQVAILLFKSG 342
           G NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 59  GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 23/59 (38%), Positives = 35/59 (59%)
 Frame = +2

Query: 77  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 253
           M + K  +K  DM +  +   +    +A   +NI+KD+AAF+K+E DKK+  TWH I G
Sbjct: 1   MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICG 59



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 250 GSNFGSYVTHETRHFIYFYLGQVAILLFKSG 342
           G  FGS V++E  HFI     +V ++++K G
Sbjct: 59  GKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 20/54 (37%), Positives = 35/54 (64%)
 Frame = +2

Query: 92  AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 253
           A ++++ M   M+Q+A   A +++  +++E DIA  +K  FD++Y P WHCI G
Sbjct: 58  ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICG 111



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 250 GSNFGSYVTHETRHFIYFYLGQVAILLFKS 339
           G +FGS+VT E   FIYF +G +A +LFK+
Sbjct: 111 GKHFGSFVTFEPDSFIYFRIGTIAFMLFKT 140


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 18/53 (33%), Positives = 33/53 (62%)
 Frame = +2

Query: 95  VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 253
           +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY   W C+VG
Sbjct: 51  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVG 103


>AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2a protein.
          Length = 111

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 18/53 (33%), Positives = 33/53 (62%)
 Frame = +2

Query: 95  VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 253
           +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY   W C+VG
Sbjct: 33  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVG 85


>AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical
           protein Y10G11A.3 protein.
          Length = 134

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 95  VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKK 223
           +I+  ++  E  +++      AL+   IE +IA+F+K++FD K
Sbjct: 50  IIQETNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAK 92


>AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical
           protein Y38F1A.5 protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 273 HIRAKIRPTMQCQVGLYFLSN 211
           H  A + P+MQC +GLY++SN
Sbjct: 237 HKLATLFPSMQCAIGLYYVSN 257


>AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D
           protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 273 HIRAKIRPTMQCQVGLYFLSN 211
           H  A + P+MQC +GLY++SN
Sbjct: 237 HKLATLFPSMQCAIGLYYVSN 257


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 405 YPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKIR-PTMQ 241
           Y  D    + + KI  +L  LTA K  +   S V+V EV     HI+  I   TMQ
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPIDFKTMQ 697


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 208 FLDKCSYVLFNVKFLERLSCTVNSILLHLFAH--VSILYDCFAITHLVLGLFLLR 50
           ++D C+  LFN+   +R++    +  + +F H  V ++Y  ++ + ++L   +LR
Sbjct: 520 WMDVCTLPLFNITLSQRIATFATAPFMSIFLHWMVGMVYVFYSASFVILLREILR 574


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,924,559
Number of Sequences: 27780
Number of extensions: 344689
Number of successful extensions: 935
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)