Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120113.Seq
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    30   0.41 
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    27   2.2  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   5.1  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   6.7  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.7  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   8.9  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   8.9  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 95  YVNYEKAVRVHVDVKYKTTYEQACINISKE---NRVKHGDPLYLSPQTILLDKI 247
           +V+  + ++ ++    + TY +A + I+K    N+V+H   LYL  Q IL D +
Sbjct: 205 WVSILRRLQSNISTSERITYTKAILAIAKHHCWNKVEHSALLYLEHQLILYDTL 258


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 324 QHVFVKPILQLRRVVHLGAHEQLLTP---ILSSNIVWGDKYSGSP 199
           Q + V+ I  L++V++   H +   P    +  ++VWG +Y+G P
Sbjct: 165 QELDVEFIENLKKVIYRYVHSKSFPPKKAAMGPDLVWGPEYNGYP 209


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 685 CEQWGKHDSSARLMCSKSVQ*TSPLLRYGLNSCFISFS-SSVWCTVGSVCST 533
           CE +G +   A +   K VQ     L+YGL + F+S + + ++  VG +C T
Sbjct: 155 CEIFGLY--VAFIYLEKGVQVLCDQLKYGLTNTFLSITIALLFLMVGWLCDT 204


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 44   DEQPVKFVAKDIARSLKYVNYEKAVRVHVDVKYKT---TYEQACINISKENRVKHGDPLY 214
            +EQ V+FV++ +   L Y+ + K + +H D+K       ++  C  IS     KH D +Y
Sbjct: 928  EEQLVRFVSRQVLYGLSYL-HSKGI-IHRDLKADNLLIDFDGVC-KISDFGISKHSDNVY 984


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 55  GQVCGQGHCPQFKICKL*KGSTC 123
           G+ C    C   K CKL KGS C
Sbjct: 332 GEDCENNPCCDGKTCKLTKGSLC 354


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 434 YSSVVAA*KWPSTGAELNFTVAWASWSRLNADAVHWGNTCS*NQFC 297
           Y  VV + +W      ++  +A ++W+RL+ + V +G   S  Q C
Sbjct: 122 YFGVVNSSEW-DIPKWIDMDIAHSNWNRLSREGVLYGGMKSYRQMC 166


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 450 VQDRPDYKLDAATGYSELRPADDDQMQYVLQTEPTVHHTLLEKLMKQELRPYRNSGEV 623
           VQD  +Y    + G SE   A  D   Y +Q   T+H+  +  + K    P  N+GE+
Sbjct: 425 VQDIINYPYLLSLGTSEYIVALPDSTPYGMQHNVTIHN--VSTIGKHPSFPLSNNGEL 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,889
Number of Sequences: 5004
Number of extensions: 54922
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)