Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120113.Seq
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555...    31   1.0  
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526...    29   4.0  
10_06_0161 + 11344712-11344877,11345870-11346084                       29   5.3  
07_03_0305 - 16475127-16476017,16476058-16478067                       28   9.3  
05_01_0051 - 345125-345693,345833-346925                               28   9.3  

>04_03_0147 -
           11853940-11854128,11854933-11855013,11855501-11855584,
           11855663-11855735,11855888-11855949,11856246-11856327,
           11857643-11858262
          Length = 396

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 252 LTAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPSDGKV*FRSRRG 404
           +TA   L++  RGGA +   R   A +H  G +P  R  +DG    R R G
Sbjct: 88  ITADRELEELARGGARERAERWAAAHLHGGGGDPRDRALADGNPDGRGRAG 138


>08_01_1013 +
           10251463-10251858,10252366-10252434,10252545-10252652,
           10253261-10253326,10254258-10254395,10255047-10255094,
           10256292-10256398,10257228-10257302,10258317-10258368,
           10258485-10259068,10259944-10260150,10260236-10260407
          Length = 673

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 EFVQDRPDYKLDAATGYSELRPADDDQMQYVLQ 542
           E V+D  DY L     Y   +P D+D M YV+Q
Sbjct: 105 EEVEDEEDYVLREIDVYFTPKPFDEDTMLYVMQ 137


>10_06_0161 + 11344712-11344877,11345870-11346084
          Length = 126

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = -1

Query: 367 GRLGAGSTPTRCTGATRVRKTNFAAPPRCASWSA*TAVN 251
           GR GAGS   RC G   +R+ ++AA    A W+A TAV+
Sbjct: 6   GRAGAGSGDWRCAG--WLRRADWAASR--AGWAALTAVD 40


>07_03_0305 - 16475127-16476017,16476058-16478067
          Length = 966

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 504 RPADDDQMQYVLQTEPTVHHTLLEKLMKQELRPYRNSGEVYCTDFEHIKRALESCL 671
           RPAD+D + Y++    ++  + +  +M   L PY  + E    DF HI  A    L
Sbjct: 704 RPADNDSLSYIVYYGWSLSTSNVRVIMLANLGPY--NFEESGPDFSHITSATNESL 757


>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 406 HFYAATTLLYAERNLF 453
           HFYAA TLL   RNLF
Sbjct: 179 HFYAAATLLPCARNLF 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,948,865
Number of Sequences: 37544
Number of extensions: 392832
Number of successful extensions: 1191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)