Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120113.Seq
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    35   0.055
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z81522-8|CAB04231.2|  786|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    29   4.8  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z67755-2|CAA91755.2|  322|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 194 KHGDPLYLSPQTILLDKIGVNSCSCAPRCTTRRSC-KIGFTNTCCPSAPRRR*ACSKTPK 370
           K G P YL+      D++ V++C  A  CT+   C  IG    CCP+       CS T  
Sbjct: 396 KRGSPQYLTGSAQNEDEV-VSNCQTASSCTSNFECTSIGSMQLCCPTVAS---VCSNTGG 451

Query: 371 RR*SLI 388
           R   L+
Sbjct: 452 RPVDLV 457


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 194 KHGDPLYLSPQTILLDKIGVNSC-SCAPRCTTRRSCK-IGFTNTCCPSA 334
           + G P + S +  +LD++   +C +   RC     C  IG   TCCP+A
Sbjct: 284 RRGAPEFASSKFSILDEVPRTNCLASTSRCDQEHQCTLIGSQQTCCPTA 332


>U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical
           protein ZK1248.9 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 YKTTYEQACINISKENRVKHGDPLYLSP 223
           Y+TT   ACIN  KE  V+ G  +Y +P
Sbjct: 16  YQTTANDACINRLKELNVESGAKIYTTP 43


>Z81522-8|CAB04231.2|  786|Caenorhabditis elegans Hypothetical
           protein F32B4.8 protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 146 TTYEQACINISKENRVKHGDPLYLSPQTILLDKIGVNSCSCAPRC 280
           T+YE+ CI  S  N+   G P+    + ++   +  +S   A  C
Sbjct: 654 TSYEKICIQKSSANKCSGGQPIRYRQKVLIGHLVDAHSVGSAAEC 698


>AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical
           protein Y39G8B.7 protein.
          Length = 179

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 254 NSCSCAPRCTTRRSCKIGFTNTCCPSAPRRR*ACSKT 364
           N   C+P C +    K GF   CC S   R   C+KT
Sbjct: 116 NCKDCSPNCASW--AKRGFCTNCCYSCQDRERYCAKT 150


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 613 LLRYGLNSCFISFSSSV-WCTVGSVCSTYCIWSSSAGRNSE 494
           +L+  L+ CF SFSS V + T  ++  T   W  S   N+E
Sbjct: 148 MLQLLLDDCFTSFSSQVDFTTYATITRTLLSWVESLAPNAE 188


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 257 SCSCAPRCTTRRSCKIGFTNTCCPSAP 337
           SC CAP C    SC +      CP+ P
Sbjct: 45  SCGCAPACPQAPSCPVCPPPQPCPAPP 71


>Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical
           protein F25H2.2 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/14 (64%), Positives = 14/14 (100%)
 Frame = -1

Query: 169 NTCLLIRRFVFDID 128
           ++CLL+R+F+FDID
Sbjct: 353 SSCLLLRKFIFDID 366


>Z67755-2|CAA91755.2|  322|Caenorhabditis elegans Hypothetical
           protein F54F7.2 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 41  GDEQPVKFVAKDIARSLKYVNYEKAVRVHVDVKYKTTY 154
           GD  PV  V+ DI   ++      +VRV ++V+Y T Y
Sbjct: 164 GDSVPVN-VSSDIGLVIEAAFMNPSVRVEIEVEYSTPY 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,931,291
Number of Sequences: 27780
Number of extensions: 331919
Number of successful extensions: 895
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)