Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120113.Seq
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28690.1 68417.m04099 expressed protein                             33   0.21 
At3g10060.1 68416.m01206 immunophilin, putative / FKBP-type pept...    29   2.6  
At4g15320.1 68417.m02344 cellulose synthase family protein simil...    29   4.5  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    28   5.9  
At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family pr...    28   7.8  
At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr...    28   7.8  

>At4g28690.1 68417.m04099 expressed protein 
          Length = 448

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 513 DDDQMQYVLQTEPTVHHTLLEKLMKQELRPYRNSGEVYCTDFEHIKRA 656
           DDD    +L  +PT   T++E      +      GEV C DF H + A
Sbjct: 54  DDDDDCVILDFDPTAKETVIETCETDGVLVVGQKGEVACRDFPHPRHA 101


>At3g10060.1 68416.m01206 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative
           Pfam:PF-254: FKBP-type peptidyl-prolyl cis-trans
           isomerases
          Length = 230

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 380 SLIPLPSRAISMRPRRCCTPKGICSRSARLQT 475
           S IP PSR    +P RC  P   C +  R +T
Sbjct: 17  SSIPFPSRKRQSKPYRCSLPSPGCEKVIRTET 48


>At4g15320.1 68417.m02344 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 828

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 471 KLDAATGYSELRPADDDQMQYVLQTEPTVHHTLLEKLMKQELR 599
           K++ ATG S    ADDD  +    T+P  H T+++ L+K  L+
Sbjct: 218 KVEDATGDSHWLDADDD-FEAFSNTKPNDHSTIVKVLLKLFLK 259


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 579  LMKQELRPYRNSGEVYCTDFEHIKRALESCLPHCSQN*SVSVCFALFVESP 731
            L KQ+L  Y  +  +Y    E++KR + S L  C Q+   S C +  V SP
Sbjct: 1415 LFKQQLTAYVET--MYGIIRENVKREVSSLLSSCIQSLKESSCDSSVVNSP 1463


>At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 485

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 366 PSDGKV*FRSRRGPFLCGHDAAVR-RKEFVQDRPDYKLDAATGYSEL 503
           P DG +  R+RRG     H  A R R+E + +R  +  D   G +++
Sbjct: 295 PKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKV 341


>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 486

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 366 PSDGKV*FRSRRGPFLCGHDAAVR-RKEFVQDRPDYKLDAATGYSEL 503
           P DG +  R+RRG     H  A R R+E + +R  +  D   G +++
Sbjct: 296 PKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKV 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,802,803
Number of Sequences: 28952
Number of extensions: 292952
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)