Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120112.Seq
         (843 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9PQ79 Cluster: Isoleucyl-tRNA synthetase; n=1; Ureapla...    36   1.7  
UniRef50_A0C9X9 Cluster: Chromosome undetermined scaffold_16, wh...    34   5.1  
UniRef50_Q155Q3 Cluster: Dixin; n=57; Deuterostomia|Rep: Dixin -...    34   5.1  
UniRef50_A5DTX1 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_Q9PQ79 Cluster: Isoleucyl-tRNA synthetase; n=1; Ureaplasma
           parvum|Rep: Isoleucyl-tRNA synthetase - Ureaplasma
           parvum (Ureaplasma urealyticum biotype 1)
          Length = 900

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 203 HDW-TKTGSSLQSSRGWNI-VALLIPSILKLFRHIIEKGEASLEERLHLRETSRKEFVKV 376
           HDW TK     ++++ W + +  ++P+IL+   + ++       ER+H    +RKE+   
Sbjct: 397 HDWRTKKPVMYRATKQWFVSIEKILPNILQTLNNDVKSTSFRGIERMHEMIVNRKEWCIS 456

Query: 377 RGKPWGV 397
           R + WGV
Sbjct: 457 RQRVWGV 463


>UniRef50_A0C9X9 Cluster: Chromosome undetermined scaffold_16, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_16, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 3381

 Score = 33.9 bits (74), Expect = 5.1
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 408  QLPQEIGLQVALSIKRS*LTKSLQALTDQYSHHSLGSIWPQPTPLIKKPMKLIQIVLD-C 584
            Q  QEI L+  L  K S    S Q   + +S   L  I P+PTP ++  + ++++    C
Sbjct: 1435 QKQQEIKLKEMLLTKNSDAQLSFQLDLENFSIFLLKDIQPKPTPFLRMMLIMMRVSFQKC 1494

Query: 585  QNGS 596
             NGS
Sbjct: 1495 NNGS 1498


>UniRef50_Q155Q3 Cluster: Dixin; n=57; Deuterostomia|Rep: Dixin -
           Homo sapiens (Human)
          Length = 683

 Score = 33.9 bits (74), Expect = 5.1
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 302 IEKGEASLEERLHLRETSRKEFVKVRGKPWGV*ATTASTRDWTPGGSL 445
           +E+G +SL ERLH+ ET +K+  KVR K       +     W P   L
Sbjct: 540 LEQGISSLMERLHVMETQKKQERKVRVKSPRTQVGSEYRESWPPNSKL 587


>UniRef50_A5DTX1 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 1110

 Score = 33.1 bits (72), Expect = 9.0
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 164 WIDKGGSDWGWRLHDWTKTGSS-LQSSRGWNIVALLIPSILKLFRHIIEKGEASLEERLH 340
           +ID G   W + + +WT + +  L  +  +++  +LI S+ KLF  I ++ +  ++E+  
Sbjct: 142 FIDNGDDQWQYHVAEWTPSDTDPLNLNLVYSMSCVLIMSLQKLF-DIKKEKKKKIDEKDE 200

Query: 341 LRETSRKEFVKVRGKPWG 394
           + E   KE  K  G   G
Sbjct: 201 IDEKEEKEEGKGNGTEKG 218


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 865,850,439
Number of Sequences: 1657284
Number of extensions: 18023281
Number of successful extensions: 46202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46194
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73783549980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)