Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120112.Seq
         (843 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    24   1.7  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   4.0  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   9.2  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.2  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 513 GSIWPQPTPLIKKPMKLIQ 569
           G++WPQPT + K    L++
Sbjct: 69  GALWPQPTSVTKISSTLLK 87


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 443 LHQAIMTHKVPSGPNRS 493
           +HQ ++ H  P  PNR+
Sbjct: 46  IHQTVIYHNNPRDPNRA 62


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 444 SIKRS*LTKSLQALTDQYSHHSLGSIWPQPTP 539
           SI++S L   LQ+     SH       P+P P
Sbjct: 231 SIRKSELLAGLQSSGSSRSHQPATKSKPRPAP 262


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 344 SDATSPLTMPPLSQLY 297
           +D+TSPL  PP +  Y
Sbjct: 12  ADSTSPLLTPPHNPAY 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,999
Number of Sequences: 336
Number of extensions: 4422
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23244256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)