Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120112.Seq
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    29   0.82 
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    28   1.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   3.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   4.4  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   7.7  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   7.7  

>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 460 HDRLMERATW-SPISCGSCGSLDTPW 386
           H  L E  +W  P +C SCGSL   W
Sbjct: 274 HKELNEYLSWMQPFTCDSCGSLHENW 299


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 194 WRLHDWTKTGSSLQSSRGWNIVALLIPSILKLFRHIIEKGEASLEERLHLRETSRK 361
           W L+ + +  +SLQ    W I+ +L  + +K   H+   GE     + HL E  +K
Sbjct: 258 WFLNSFNQRRNSLQLYSSWFIILILSDARIKENTHLYANGEGQ-HIKNHLLELFKK 312


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 839  LLHLVTSTTSQNGIMIFFNFPNHKVLSLA 753
            L HLV   T +N I +    P HK+  LA
Sbjct: 1306 LFHLVLLPTMENMITVLTEKPEHKIFGLA 1334


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 257 VALLIP-SILKLFRHIIEKGEASLEERLHLRETSRKEFVKVRGKPW 391
           +AL+ P S +K  + I    E  L+  L LRE  RK+ +  R K W
Sbjct: 344 IALINPTSQVKASKAISTVQEIGLKWTLKLREVERKQLLTAREKWW 389


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 269 SKVLLCSSLWRIEGWNRSLSSHVIANPSQNLPCQS 165
           S  LL   +WR EGW R   S +  N  + +P  S
Sbjct: 324 SATLLIRDIWRSEGW-RKYYSGMATNFIRTIPASS 357


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 239 RIEGWNRSLSSHVIANPSQNLPCQSNF 159
           R + W+RSLS+++  + S + P  S+F
Sbjct: 113 RKKSWSRSLSNNISLSQSSSSPATSSF 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,610,231
Number of Sequences: 5004
Number of extensions: 76549
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)