Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120112.Seq
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0228 + 1832172-1832446,1832524-1832698                           29   3.5  
07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672     29   3.5  
05_05_0187 - 23094816-23095466                                         29   4.6  

>08_01_0228 + 1832172-1832446,1832524-1832698
          Length = 149

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 218 TGSSLQSSRGWNIVALLIPSILKLFRHIIEKGEASLEERLHLRETSRKEFVKVRGK-PWG 394
           T SS + +   N+ AL +P+I +     ++KG  +  + +       +E   +R + PW 
Sbjct: 70  TLSSRKKTEQCNLGALALPAIPRY----LQKGAWAFNDLMATVMLKAEEVAVLRCRSPWL 125

Query: 395 V*ATTASTRDWTPGGSLHQ 451
           V      +R W+PGG   Q
Sbjct: 126 VGVPDQRSRGWSPGGEAEQ 144


>07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672
          Length = 641

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 683 QVSVIKDLRSSSSRCELIRVSIC 615
           Q  ++K L+SSSSRC + R S+C
Sbjct: 416 QTCIMKILKSSSSRCPICRRSLC 438


>05_05_0187 - 23094816-23095466
          Length = 216

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 420 LVEAVVA*TPHGFPLTLTNSFLEVSLRCNLSS 325
           +VE+ V   PHG     T  F++  +RCNL S
Sbjct: 169 VVESYVVDVPHGNTADETRMFVDTIVRCNLQS 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,418,433
Number of Sequences: 37544
Number of extensions: 508110
Number of successful extensions: 1181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)