Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120112.Seq
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         29   6.2  
SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)                 28   8.2  

>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 423 SLVEAVVA*TPHGFPLTLTNS--FLEVSLRCNLSSNDASPFSIICLN 289
           S  E V      GF + LTN+  F E   RC L S  A+P SI+  N
Sbjct: 96  SSAEGVKLLDGEGFKILLTNTSVFSETRFRCRLFSAFAAPASILLPN 142


>SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)
          Length = 857

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 222 PVFVQSCNRQPQSEPPLSIQFQIDQWCQESGKPL 121
           PVF Q+C +       L+ Q Q+ QWC E  +PL
Sbjct: 6   PVFHQACQK-------LAYQVQLVQWCLEKAQPL 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,528,356
Number of Sequences: 59808
Number of extensions: 557640
Number of successful extensions: 1366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)