Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120112.Seq
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.5  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   4.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.2  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
 Frame = +2

Query: 161 NWIDK-GGSDWGWR 199
           NW+   GGS W WR
Sbjct: 163 NWVGVFGGSAWSWR 176


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
 Frame = +2

Query: 161 NWIDK-GGSDWGWR 199
           NW+   GGS W WR
Sbjct: 163 NWVGVFGGSAWSWR 176


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 513 GSIWPQPTPLIKKPMKLI 566
           GS  P+P PL+KK   L+
Sbjct: 27  GSSSPRPKPLLKKEYPLV 44


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 348 KPQEKNLSRLGGNHGVSKLPQLPQEIGLQVALSIKR 455
           +P    + R G N    +LP +   IG+ +A  +KR
Sbjct: 360 RPMHNVVYRPGENPVTQRLPAVLSRIGIILASPLKR 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,444
Number of Sequences: 438
Number of extensions: 5174
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)