Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120112.Seq
         (843 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15390.2 68415.m01761 xyloglucan fucosyltransferase, putative...    29   2.9  
At2g15390.1 68415.m01760 xyloglucan fucosyltransferase, putative...    29   2.9  
At4g31880.1 68417.m04531 expressed protein                             28   8.9  

>At2g15390.2 68415.m01761 xyloglucan fucosyltransferase, putative
           (FUT4) identical to SP|Q9SJP2 Probable
           fucosyltransferase 4 (EC 2.4.1.-) (AtFUT4) {Arabidopsis
           thaliana}; similar to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 500

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = -1

Query: 351 VSLRCNLSSNDASPFSIICLNNFKIEGIKSATMFQPLED*RLEPVFVQSCNRQPQSEPPL 172
           +SL  N+ ++  S F  +    + + G+K   ++ P ++   +P  V+S + +P    P 
Sbjct: 409 LSLTDNIVASSRSTFGYVA---YSLGGLKPWLLYLPNDNKAPDPPCVRSTSMEPCFLTPP 465

Query: 171 SIQFQIDQWCQESGK 127
           +   + D W  ESGK
Sbjct: 466 THGCEPDAWGTESGK 480


>At2g15390.1 68415.m01760 xyloglucan fucosyltransferase, putative
           (FUT4) identical to SP|Q9SJP2 Probable
           fucosyltransferase 4 (EC 2.4.1.-) (AtFUT4) {Arabidopsis
           thaliana}; similar to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 503

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = -1

Query: 351 VSLRCNLSSNDASPFSIICLNNFKIEGIKSATMFQPLED*RLEPVFVQSCNRQPQSEPPL 172
           +SL  N+ ++  S F  +    + + G+K   ++ P ++   +P  V+S + +P    P 
Sbjct: 412 LSLTDNIVASSRSTFGYVA---YSLGGLKPWLLYLPNDNKAPDPPCVRSTSMEPCFLTPP 468

Query: 171 SIQFQIDQWCQESGK 127
           +   + D W  ESGK
Sbjct: 469 THGCEPDAWGTESGK 483


>At4g31880.1 68417.m04531 expressed protein
          Length = 873

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 680 VSVIKDLRSSSSRCELIRVSICLIVSKVRSILAVKD 573
           VS  +DL   SSR    R+SI   V+KVRS + + D
Sbjct: 109 VSSFEDLVDKSSRSYAKRISILETVAKVRSCVVMLD 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,995,262
Number of Sequences: 28952
Number of extensions: 413840
Number of successful extensions: 1121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)