Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120111.Seq
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    27   2.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.9  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.1  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   6.8  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   6.8  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   9.0  

>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 506 IISIIMRVKKINPRLHSAFISPFRSCLEQIWSYKNLVIEVEELRTI 643
           ++   +RV ++ P      I    S  E  W YKN+V ++EE R I
Sbjct: 120 VVPAALRVLRLKPSRKYCTIGRLSS--EVGWKYKNIVSKLEERRKI 163


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 694 GLYLCLMKHLNHGFQNNGNILDSG 765
           GL +C   HL+H  Q+NG++   G
Sbjct: 19  GLSICAFNHLHHVPQHNGSLAHEG 42


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 717 FHQAQVKTTIFNSFSSCSMLLLSNGIVLNSS 625
           F++  +KTT  N+FS   +L+L N  +   +
Sbjct: 256 FYETDLKTTFLNAFSRDELLMLVNYFIFRGT 286


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 765 PGIQYIAIVLKS-VIQVFHQAQVKTTIFNSFSSCSMLLLSNGIVLNSSTS 619
           P + ++   L S V+QV  Q      +FN +S  S+  LS+ +VL++ +S
Sbjct: 41  PPLGFLRPKLNSLVVQVKRQGITAEPVFNLYSRFSVHTLSHNLVLDNVSS 90


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 327 DESFFSKTILKLVSRTIVKLSKYCNYHCFREKKYSGLKQHQNTVFL 190
           DE   S T+  L   T V    + NY+  +E  Y GLK    T ++
Sbjct: 196 DEICISVTVRVLQDPTGVLWHSFVNYNSKKETGYVGLKNQGATCYM 241


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 384 NVEKSLSLSRTKDVKEVISFLDRVVLEKQFVPNNFHNLL 500
           N+E  ++ S+ KD KE +  L  V+ + +   N+F NL+
Sbjct: 290 NLETLMASSKWKDRKEALDKLLPVLSQPKIKDNDFFNLV 328


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 585 KQLLNGDIKALCNLGLIFFTLIIIEMMDPINCES 484
           K++L   +  + +L  ++F LI  +    +NCES
Sbjct: 16  KKILELTVSGVSDLNAVYFYLIYTKSNSSLNCES 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,364,613
Number of Sequences: 5004
Number of extensions: 73097
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)