Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120111.Seq
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0328 + 16437947-16438091,16439953-16440062,16440446-164405...    29   5.4  
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566...    28   7.1  
03_02_0956 + 12700507-12700540,12700640-12700676,12700792-127010...    28   9.4  

>11_04_0328 +
           16437947-16438091,16439953-16440062,16440446-16440514,
           16440840-16440955,16441049-16441103,16441206-16441326,
           16441541-16441635,16441728-16441826
          Length = 269

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 690 LWSLLVPDETLESRISKQWQYIGFR 764
           LW    PD+ L+  IS+QW+ +G++
Sbjct: 114 LWHATYPDQELQGLISEQWKDMGWQ 138


>04_04_0319 +
           24355275-24355401,24355504-24355603,24356271-24356618,
           24356705-24356745,24356821-24356867,24358043-24358107,
           24358186-24358308,24358397-24358534,24358658-24358899,
           24358988-24359118,24359363-24359388,24359746-24359882,
           24359964-24360376,24360514-24360550,24360643-24360667,
           24360755-24360887,24361241-24361340,24362015-24362115,
           24362998-24363084
          Length = 806

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 566 SPFRSCLEQIWSYKNLVIEVEELRTIPFDSNNIEHE 673
           +P  SC E + S + L +E+ E   I  D+ N+E E
Sbjct: 523 TPENSCRESVKSRRRLSLELSESNNICDDAKNVEGE 558


>03_02_0956 +
           12700507-12700540,12700640-12700676,12700792-12701002,
           12701085-12701246,12701897-12702016,12702103-12702525
          Length = 328

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 357 DIAGAQRTRNVEKSLSLSRTKDVKEVISFLDRVVLEKQFVPNNFHNLL 500
           ++A  +R + + K LSLS  K    +   LDR++      P   H++L
Sbjct: 240 EMAQQRRDQQLRKGLSLSLPKPAAPLHGGLDRIIKSFSTTPIELHSIL 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,163,851
Number of Sequences: 37544
Number of extensions: 373228
Number of successful extensions: 780
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)