Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120111.Seq
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_10909| Best HMM Match : TFIIB (HMM E-Value=0.14)                    28   7.2  

>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 23/65 (35%), Positives = 36/65 (55%)
 Frame = +2

Query: 497 IGSIISIIMRVKKINPRLHSAFISPFRSCLEQIWSYKNLVIEVEELRTIPFDSNNIEHEE 676
           I   + +IM  KKI+      F      CL+QI  Y +L+  + E R   ++S+N +HE+
Sbjct: 496 ISQAVQMIMSTKKIDIGKEKVFYDNMSVCLKQICGYTDLIKTINEYRKERYNSDNKDHEK 555

Query: 677 KLLKI 691
           KLLK+
Sbjct: 556 KLLKL 560



 Score = 35.9 bits (79), Expect = 0.036
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +3

Query: 687 KLWSLLVPDETLESRISKQWQYIGFR 764
           KLW L++P   LE+RI+ QW  IGF+
Sbjct: 559 KLWELMMPGTKLENRITSQWGDIGFQ 584


>SB_10909| Best HMM Match : TFIIB (HMM E-Value=0.14)
          Length = 666

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 366 GAQRTRNVEKSLSLSRTKDVK-EVISFLDRVVLEKQFVPNNFHN 494
           G +    ++KS+   R  ++  + +SF+ R+ L+  ++PN+ +N
Sbjct: 620 GLKYANTIDKSIIAERVTEIDIDPLSFVTRLTLQNTYIPNHPNN 663


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,481,087
Number of Sequences: 59808
Number of extensions: 488943
Number of successful extensions: 1002
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)