Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120111.Seq
         (765 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028725-1|AAH28725.3|  334|Homo sapiens ELMO/CED-12 domain cont...    59   1e-08
BC015168-1|AAH15168.2|  293|Homo sapiens ELMO/CED-12 domain cont...    59   1e-08

>BC028725-1|AAH28725.3|  334|Homo sapiens ELMO/CED-12 domain
           containing 1 protein.
          Length = 334

 Score = 59.3 bits (137), Expect = 1e-08
 Identities = 30/68 (44%), Positives = 43/68 (63%)
 Frame = +2

Query: 497 IGSIISIIMRVKKINPRLHSAFISPFRSCLEQIWSYKNLVIEVEELRTIPFDSNNIEHEE 676
           I   I  IM +KKINP ++       ++CL QI  Y+NL+ +VE+LR   +DS+N +HEE
Sbjct: 77  IEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREAYDSDNPQHEE 136

Query: 677 KLLKIVVF 700
            LLK+  F
Sbjct: 137 MLLKLWKF 144



 Score = 47.2 bits (107), Expect = 6e-05
 Identities = 23/48 (47%), Positives = 31/48 (64%)
 Frame = +3

Query: 297 LKWFLRKTTRLCELQRICYGDIAGAQRTRNVEKSLSLSRTKDVKEVIS 440
           LK+ +RK T  CELQRICY    GA RT  +E SL  S++K ++  +S
Sbjct: 24  LKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLLQTSVS 71



 Score = 39.1 bits (87), Expect = 0.017
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +3

Query: 687 KLWSLLVPDETLESRISKQWQYIGFR 764
           KLW  L P+  LESRISKQW  IGF+
Sbjct: 140 KLWKFLKPNTPLESRISKQWCEIGFQ 165


>BC015168-1|AAH15168.2|  293|Homo sapiens ELMO/CED-12 domain
           containing 2 protein.
          Length = 293

 Score = 59.3 bits (137), Expect = 1e-08
 Identities = 26/65 (40%), Positives = 41/65 (63%)
 Frame = +2

Query: 497 IGSIISIIMRVKKINPRLHSAFISPFRSCLEQIWSYKNLVIEVEELRTIPFDSNNIEHEE 676
           +   +  IM+ K INP   ++F    + CL QI  YK L ++VE +R  P+DS+N++HEE
Sbjct: 70  VDKYVDDIMKEKNINPEKDASFKICMKMCLLQITGYKQLYLDVESVRKRPYDSDNLQHEE 129

Query: 677 KLLKI 691
            L+K+
Sbjct: 130 LLMKL 134



 Score = 46.4 bits (105), Expect = 1e-04
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
 Frame = +3

Query: 297 LKWFLRKTTRLCELQRICYGDIAGAQRTRNVEKSLSLSRTKDVK--------EVISFLDR 452
           +KW LR+ T  CELQRI +    GAQRT  +E SL+ S+ K ++        EV  ++D 
Sbjct: 18  MKWLLRQMTGKCELQRI-FDTYVGAQRTHRIENSLTYSKNKVLQKATHVVQSEVDKYVDD 76

Query: 453 VVLEKQFVP 479
           ++ EK   P
Sbjct: 77  IMKEKNINP 85



 Score = 39.9 bits (89), Expect = 0.010
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +3

Query: 687 KLWSLLVPDETLESRISKQWQYIGFR 764
           KLW+LL+P + L +RISKQW  IGF+
Sbjct: 133 KLWNLLMPTKKLNARISKQWAEIGFQ 158


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,293,826
Number of Sequences: 237096
Number of extensions: 2229205
Number of successful extensions: 3622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3622
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)