Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120111.Seq
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical ... 31 0.90
Z82075-6|CAN99721.1| 1047|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z82075-5|CAD54162.1| 1021|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z82075-4|CAB04932.1| 1023|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL021489-6|CAN99715.1| 1047|Caenorhabditis elegans Hypothetical ... 28 6.3
AL021489-5|CAD54166.1| 1021|Caenorhabditis elegans Hypothetical ... 28 6.3
AL021489-4|CAA16371.1| 1023|Caenorhabditis elegans Hypothetical ... 28 6.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.4
>AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical
protein T27B7.2 protein.
Length = 476
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -1
Query: 360 YHHNIFFAIHIDESFFSKTILKLVSRTIVKLSKYCNYHCFRE 235
+H N+FF ++ +F K SR ++K+SK+CN+ F++
Sbjct: 438 FHPNMFFPDNLKFAFPPKVF----SRKVLKISKFCNFVSFQD 475
>Z82075-6|CAN99721.1| 1047|Caenorhabditis elegans Hypothetical
protein W07A8.2c protein.
Length = 1047
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 331 VNCKEYVMVISRELKERVTWKN 396
VN K+Y+ I EL++ +TWK+
Sbjct: 289 VNIKDYLHTIFHELRDNMTWKS 310
>Z82075-5|CAD54162.1| 1021|Caenorhabditis elegans Hypothetical
protein W07A8.2b protein.
Length = 1021
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 331 VNCKEYVMVISRELKERVTWKN 396
VN K+Y+ I EL++ +TWK+
Sbjct: 263 VNIKDYLHTIFHELRDNMTWKS 284
>Z82075-4|CAB04932.1| 1023|Caenorhabditis elegans Hypothetical
protein W07A8.2a protein.
Length = 1023
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 331 VNCKEYVMVISRELKERVTWKN 396
VN K+Y+ I EL++ +TWK+
Sbjct: 265 VNIKDYLHTIFHELRDNMTWKS 286
>AL021489-6|CAN99715.1| 1047|Caenorhabditis elegans Hypothetical
protein W07A8.2c protein.
Length = 1047
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 331 VNCKEYVMVISRELKERVTWKN 396
VN K+Y+ I EL++ +TWK+
Sbjct: 289 VNIKDYLHTIFHELRDNMTWKS 310
>AL021489-5|CAD54166.1| 1021|Caenorhabditis elegans Hypothetical
protein W07A8.2b protein.
Length = 1021
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 331 VNCKEYVMVISRELKERVTWKN 396
VN K+Y+ I EL++ +TWK+
Sbjct: 263 VNIKDYLHTIFHELRDNMTWKS 284
>AL021489-4|CAA16371.1| 1023|Caenorhabditis elegans Hypothetical
protein W07A8.2a protein.
Length = 1023
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 331 VNCKEYVMVISRELKERVTWKN 396
VN K+Y+ I EL++ +TWK+
Sbjct: 265 VNIKDYLHTIFHELRDNMTWKS 286
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 515 IIMRVKKINPRLHSAFISPFRSCLEQIWSYKNLVIEVEELR-TIPFDSNNIEHEEKLLKI 691
+I +K+I+PR ++ F C+E + + +E+R T+ NNI+ E LK+
Sbjct: 1060 LIEEMKRIDPRRARFALTDFHHCIE------SSRVNADEIRKTVQLTENNIKKLENCLKV 1113
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 515 IIMRVKKINPRLHSAFISPFRSCLEQIWSYKNLVIEVEELR-TIPFDSNNIEHEEKLLKI 691
+I +K+I+PR ++ F C+E + + +E+R T+ NNI+ E LK+
Sbjct: 1060 LIEEMKRIDPRRARFALTDFHHCIE------SSRVNADEIRKTVQLTENNIKKLENCLKV 1113
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 515 IIMRVKKINPRLHSAFISPFRSCLEQIWSYKNLVIEVEELR-TIPFDSNNIEHEEKLLKI 691
+I +K+I+PR ++ F C+E + + +E+R T+ NNI+ E LK+
Sbjct: 643 LIEEMKRIDPRRARFALTDFHHCIE------SSRVNADEIRKTVQLTENNIKKLENCLKV 696
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,240,446
Number of Sequences: 27780
Number of extensions: 398027
Number of successful extensions: 1046
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -