Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120111.Seq
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67400.1 68414.m07671 phagocytosis and cell motility protein ...    31   0.64 
At2g44770.1 68415.m05572 phagocytosis and cell motility protein ...    30   1.5  
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    29   2.6  
At3g60260.2 68416.m06736 phagocytosis and cell motility protein ...    29   4.5  
At3g60260.1 68416.m06735 phagocytosis and cell motility protein ...    29   4.5  
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    28   5.9  

>At1g67400.1 68414.m07671 phagocytosis and cell motility protein
           ELMO1-related contains weak similarity to ELMO1 [Mus
           musculus] gi|16118551|gb|AAL14464
          Length = 328

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 690 LWSLLVPDETLESRISKQWQYIGFR 764
           LWS   PDE L+  IS QW+ +G++
Sbjct: 157 LWSATYPDEKLQDLISDQWKNMGWQ 181


>At2g44770.1 68415.m05572 phagocytosis and cell motility protein
           ELMO1-related contains weak similarity to ELMO1 [Mus
           musculus] gi|16118551|gb|AAL14464
          Length = 266

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 687 KLWSLLVPDETLESRISKQWQYIGFR 764
           +LW L  P+E L   IS+QW+ +G++
Sbjct: 93  ELWKLSFPEEELHGLISEQWKEMGWQ 118


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 542 PRLHSAFISPFRSCLEQIWSYKNLVIEVEELRTI 643
           P   SAFI P  SCL ++  Y  LV+ + E+  +
Sbjct: 837 PHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIV 870


>At3g60260.2 68416.m06736 phagocytosis and cell motility protein
           ELMO1-related contains weak similarity to ELMO1 [Mus
           musculus] gi|16118551|gb|AAL14464
          Length = 266

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 690 LWSLLVPDETLESRISKQWQYIGFR 764
           LW L  P+E L   +S QW+ +G++
Sbjct: 94  LWKLAFPEEELHGIVSDQWKEMGWQ 118


>At3g60260.1 68416.m06735 phagocytosis and cell motility protein
           ELMO1-related contains weak similarity to ELMO1 [Mus
           musculus] gi|16118551|gb|AAL14464
          Length = 266

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 690 LWSLLVPDETLESRISKQWQYIGFR 764
           LW L  P+E L   +S QW+ +G++
Sbjct: 94  LWKLAFPEEELHGIVSDQWKEMGWQ 118


>At5g02880.1 68418.m00231 HECT-domain-containing protein /
           ubiquitin-transferase family protein /
           armadillo/beta-catenin-like repeat-containing protein
           similar to SP|Q14669 Thyroid receptor interacting
           protein 12 (TRIP12) {Homo sapiens}; contains Pfam
           profiles PF00632: HECT-domain (ubiquitin-transferase),
           PF00514: Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 605 KNLVIEVEELRTIPFDSNNIEHEEKLLKI 691
           KNL + + EL T+P D+ ++ H+EK   I
Sbjct: 619 KNLSVALSELMTVPIDA-HVLHDEKFFSI 646


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,718,253
Number of Sequences: 28952
Number of extensions: 345374
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)