Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120110.Seq
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 142 4e-35
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 142 4e-35
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 142 4e-35
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 36 0.007
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 31 0.26
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.35
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3... 27 2.4
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 142 bits (345), Expect = 4e-35
Identities = 62/87 (71%), Positives = 75/87 (86%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G + N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIV
Sbjct: 109 GTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIV 168
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKP+LKAGRA+HKY+VKRNCW
Sbjct: 169 AGGGRIDKPLLKAGRAFHKYRVKRNCW 195
Score = 85.4 bits (202), Expect = 9e-18
Identities = 37/54 (68%), Positives = 46/54 (85%)
Frame = +2
Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
+LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG
Sbjct: 27 QLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEG 80
Score = 60.5 bits (140), Expect = 3e-10
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
+YTGQFVYCGK A L VGNV+PVG MPEGT+ + ++ K
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEK 118
Score = 48.8 bits (111), Expect = 9e-07
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +2
Query: 770 RGVAMNPVEHPHGGGNHQH 826
RGVAMNPV+HPHGGGNHQH
Sbjct: 199 RGVAMNPVDHPHGGGNHQH 217
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGA 254
MGRVIRAQRK +G +F +HT+ RKGA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGA 25
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 142 bits (345), Expect = 4e-35
Identities = 62/87 (71%), Positives = 75/87 (86%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G + N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIV
Sbjct: 109 GTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIV 168
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKP+LKAGRA+HKY+VKRNCW
Sbjct: 169 AGGGRIDKPLLKAGRAFHKYRVKRNCW 195
Score = 85.4 bits (202), Expect = 9e-18
Identities = 37/54 (68%), Positives = 46/54 (85%)
Frame = +2
Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
+LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG
Sbjct: 27 QLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEG 80
Score = 60.5 bits (140), Expect = 3e-10
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
+YTGQFVYCGK A L VGNV+PVG MPEGT+ + ++ K
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEK 118
Score = 48.8 bits (111), Expect = 9e-07
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +2
Query: 770 RGVAMNPVEHPHGGGNHQH 826
RGVAMNPV+HPHGGGNHQH
Sbjct: 199 RGVAMNPVDHPHGGGNHQH 217
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGA 254
MGRVIRAQRK +G +F +HT+ RKGA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGA 25
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 142 bits (345), Expect = 4e-35
Identities = 62/87 (71%), Positives = 75/87 (86%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G + N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIV
Sbjct: 109 GTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIV 168
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKP+LKAGRA+HKY+VKRNCW
Sbjct: 169 AGGGRIDKPLLKAGRAFHKYRVKRNCW 195
Score = 85.4 bits (202), Expect = 9e-18
Identities = 37/54 (68%), Positives = 46/54 (85%)
Frame = +2
Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
+LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG
Sbjct: 27 QLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEG 80
Score = 60.5 bits (140), Expect = 3e-10
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
+YTGQFVYCGK A L VGNV+PVG MPEGT+ + ++ K
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEK 118
Score = 48.8 bits (111), Expect = 9e-07
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +2
Query: 770 RGVAMNPVEHPHGGGNHQH 826
RGVAMNPV+HPHGGGNHQH
Sbjct: 199 RGVAMNPVDHPHGGGNHQH 217
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGA 254
MGRVIRAQRK +G +F +HT+ RKGA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGA 25
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 35.9 bits (79), Expect = 0.007
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 767 VRGVAMNPVEHPHGGG 814
VRG AMNP +HPHGGG
Sbjct: 258 VRGTAMNPCDHPHGGG 273
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/63 (26%), Positives = 35/63 (55%)
Frame = +3
Query: 540 RGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 719
+ +L R++G+ A +I D K V+L SG ++ + ++ +G+V+ + + KA
Sbjct: 189 KAKLCRSAGSSARIIAF--DGKYAIVRLQSGEERKILDTSFATIGVVSNIYWQHRQLGKA 246
Query: 720 GRA 728
GR+
Sbjct: 247 GRS 249
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 30.7 bits (66), Expect = 0.26
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 552 PDDLYHPFSLQDCTHGTLRHSSNRHHISNFKSCFLSTINKLACVEPSGAMKSSFLVLN-- 379
P+D + SL+ + L SS HH+ +ST L ++ K+ F+VLN
Sbjct: 219 PEDCIN--SLEGFSCAMLNTSSESHHLLELLGLRISTFMSLGDIDKELISKTDFVVLNNA 276
Query: 378 LYGSRKCTTAKG 343
+Y S K + +G
Sbjct: 277 VYDSEKISFPEG 288
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 685 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 515
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 188
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 352 CCTLPRSIQVQDKEGALHCSRRLYTGQFVYCGKKATLEVGNVMPVGAM-PEGTMCAILKR 528
C TLP + + E +++ Q +Y G+K + + N + + P G + A ++
Sbjct: 61 CITLPNETTIAEAE-----LKKIREFQNIY-GEKNVILLSNSIGTRKLDPTGELAAHFQQ 114
Query: 529 KWVIEVVWHVPLE 567
KW I VV H L+
Sbjct: 115 KWNIPVVRHSKLK 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,534,466
Number of Sequences: 5004
Number of extensions: 74323
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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