Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120110.Seq
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      134   8e-32
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    33   0.28 
07_01_1201 - 11419851-11419913,11420090-11420311                       32   0.48 
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814...    30   1.9  
07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448     29   3.4  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   3.4  
02_04_0453 + 23053621-23054167,23054867-23054958,23055085-230551...    29   3.4  
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443...    29   5.9  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  134 bits (324), Expect = 8e-32
 Identities = 59/87 (67%), Positives = 71/87 (81%)
 Frame = +3

Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
           G  VCN+E  +GDRG  ARASG++A VI HNPD   +R+KLPSGAKK++PSS R M+G V
Sbjct: 110 GAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQV 169

Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
           AGGGR +KP+LKAG AYHKY+VKRNCW
Sbjct: 170 AGGGRTEKPMLKAGNAYHKYRVKRNCW 196



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 37/54 (68%), Positives = 46/54 (85%)
 Frame = +2

Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
           + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V FR P+++K +KELF+A EG
Sbjct: 28  RFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEG 81



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 19/31 (61%), Positives = 28/31 (90%)
 Frame = +1

Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTM 510
           +YTGQFVYCG++ATL +GNV+P+ ++PEG +
Sbjct: 82  MYTGQFVYCGRRATLSIGNVLPIRSVPEGAV 112



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +2

Query: 767 VRGVAMNPVEHPHGGGNHQH 826
           VRGVAMNPVEHPHGGGNHQH
Sbjct: 199 VRGVAMNPVEHPHGGGNHQH 218



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 23/29 (79%), Positives = 23/29 (79%)
 Frame = +3

Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGALNF 263
           MGRVIRAQRKGAGSVF SHT  RKG   F
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARF 29


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 683 WRWTY*QTYFESWKGIPQVQG 745
           W WTY  T+F SW  +P +QG
Sbjct: 70  WSWTYWSTFFLSWSIVPTLQG 90


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -1

Query: 700 SIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSS 521
           ++ PPP  +P +P     R+   P G        +G  P        A  R+P +P+F S
Sbjct: 12  ALLPPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70

Query: 520 RL 515
           R+
Sbjct: 71  RV 72


>03_06_0376 +
           33479776-33479958,33481055-33481236,33481345-33481469,
           33481858-33482057,33482629-33482762,33483095-33483158,
           33483764-33484441,33484723-33484839
          Length = 560

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -3

Query: 173 YDPSLKDFIKSN*LNVGLSFSLYISYPVIKFKD 75
           YD  L D  K+  L + LS  +Y+  PVIKFKD
Sbjct: 366 YDCILDDETKNIFLPIHLSEEVYVGDPVIKFKD 398


>07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448
          Length = 333

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = -2

Query: 579 QWRSF-QRHVPDDLYHPFSLQDCTH----GTLRHSSNRHHISNFKSCFLSTINKLACVEP 415
           QWR + Q+H+ D   +P S   CTH    G +     +   SN     +S   +  C +P
Sbjct: 126 QWRKYGQKHIQDSPNNPRSYYRCTHRPDQGCMATKQVQTSESNSSEFVISYYGEHTCSDP 185

Query: 414 S 412
           S
Sbjct: 186 S 186


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 560 LWKLRHCDWT 589
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>02_04_0453 +
           23053621-23054167,23054867-23054958,23055085-23055149,
           23058558-23059086
          Length = 410

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 668 GRYCCWRWTY*QTY--FESWKGIPQVQGQT*-LLAYVRGVAMNPVEHPHGGG 814
           G+YC    T    +  FES  G P+  G     LAY RGVA++ V    GGG
Sbjct: 179 GKYCVCSSTCIPNHVVFESPAGFPKPPGSGYRALAYTRGVAVSAVTLEPGGG 230


>02_05_0812 +
           31942591-31942758,31943415-31943491,31944169-31944327,
           31944559-31944772,31944849-31944935,31945022-31945161,
           31945380-31945460,31945948-31946012,31946219-31946394,
           31947212-31947342,31947438-31947525,31947671-31947884,
           31948206-31948312,31948456-31948953
          Length = 734

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 683 WRWTY*QTYFESWKGIPQVQG 745
           W W+Y  T+  +W  +P +QG
Sbjct: 70  WSWSYWSTFILTWAVVPTIQG 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,531,289
Number of Sequences: 37544
Number of extensions: 506277
Number of successful extensions: 1353
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)