Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120110.Seq
(826 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8 prot... 155 2e-37
CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein. 155 2e-37
BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8 pr... 155 2e-37
BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8 pr... 155 2e-37
BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8 pr... 155 2e-37
BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8 pr... 155 2e-37
BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8 pr... 155 2e-37
BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein. 155 2e-37
AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8 pr... 155 2e-37
AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8 pr... 98 3e-20
AK124779-1|BAC85944.1| 163|Homo sapiens protein ( Homo sapiens ... 32 2.2
BC071733-1|AAH71733.1| 457|Homo sapiens retinoic acid receptor,... 31 5.1
AF283809-1|AAF87249.1| 54|Homo sapiens retinoic acid receptor ... 31 5.1
>Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 155 bits (375), Expect = 2e-37
Identities = 69/87 (79%), Positives = 78/87 (89%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G VC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V
Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKPILKAGRAYHKYK KRNCW
Sbjct: 170 AGGGRIDKPILKAGRAYHKYKAKRNCW 196
Score = 98.3 bits (234), Expect = 3e-20
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +2
Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
+LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 28 RLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 62.1 bits (144), Expect = 2e-09
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
++TGQFVYCGKKA L +GNV+PVG MPEGT+ L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119
Score = 48.0 bits (109), Expect = 4e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 767 VRGVAMNPVEHPHGGGNHQH 826
VRGVAMNPVEHP GGGNHQH
Sbjct: 199 VRGVAMNPVEHPFGGGNHQH 218
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +3
Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGA 254
MGRVIR QRKGAGSVF +H K RKGA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGA 26
>CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein.
Length = 257
Score = 155 bits (375), Expect = 2e-37
Identities = 69/87 (79%), Positives = 78/87 (89%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G VC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V
Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKPILKAGRAYHKYK KRNCW
Sbjct: 170 AGGGRIDKPILKAGRAYHKYKAKRNCW 196
Score = 98.3 bits (234), Expect = 3e-20
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +2
Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
+LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 28 RLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 62.1 bits (144), Expect = 2e-09
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
++TGQFVYCGKKA L +GNV+PVG MPEGT+ L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119
Score = 48.0 bits (109), Expect = 4e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 767 VRGVAMNPVEHPHGGGNHQH 826
VRGVAMNPVEHP GGGNHQH
Sbjct: 199 VRGVAMNPVEHPFGGGNHQH 218
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +3
Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGA 254
MGRVIR QRKGAGSVF +H K RKGA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGA 26
>BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 155 bits (375), Expect = 2e-37
Identities = 69/87 (79%), Positives = 78/87 (89%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G VC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V
Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKPILKAGRAYHKYK KRNCW
Sbjct: 170 AGGGRIDKPILKAGRAYHKYKAKRNCW 196
Score = 98.3 bits (234), Expect = 3e-20
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +2
Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
+LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 28 RLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 62.5 bits (145), Expect = 2e-09
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
++TGQFVYCGKKA L VGNV+PVG MPEGT+ L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEK 119
Score = 48.0 bits (109), Expect = 4e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 767 VRGVAMNPVEHPHGGGNHQH 826
VRGVAMNPVEHP GGGNHQH
Sbjct: 199 VRGVAMNPVEHPFGGGNHQH 218
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +3
Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGA 254
MGRVIR QRKGAGSVF +H K RKGA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGA 26
>BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 155 bits (375), Expect = 2e-37
Identities = 69/87 (79%), Positives = 78/87 (89%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G VC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V
Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKPILKAGRAYHKYK KRNCW
Sbjct: 170 AGGGRIDKPILKAGRAYHKYKAKRNCW 196
Score = 98.3 bits (234), Expect = 3e-20
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +2
Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
+LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 28 RLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 62.1 bits (144), Expect = 2e-09
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
++TGQFVYCGKKA L +GNV+PVG MPEGT+ L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119
Score = 48.0 bits (109), Expect = 4e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 767 VRGVAMNPVEHPHGGGNHQH 826
VRGVAMNPVEHP GGGNHQH
Sbjct: 199 VRGVAMNPVEHPFGGGNHQH 218
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +3
Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGA 254
MGRVIR QRKGAGSVF +H K RKGA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGA 26
>BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 155 bits (375), Expect = 2e-37
Identities = 69/87 (79%), Positives = 78/87 (89%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G VC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V
Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKPILKAGRAYHKYK KRNCW
Sbjct: 170 AGGGRIDKPILKAGRAYHKYKAKRNCW 196
Score = 98.3 bits (234), Expect = 3e-20
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +2
Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
+LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 28 RLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 62.5 bits (145), Expect = 2e-09
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
++TGQFVYCGKKA L VGNV+PVG MPEGT+ L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEK 119
Score = 48.0 bits (109), Expect = 4e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 767 VRGVAMNPVEHPHGGGNHQH 826
VRGVAMNPVEHP GGGNHQH
Sbjct: 199 VRGVAMNPVEHPFGGGNHQH 218
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +3
Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGA 254
MGRVIR QRKGAGSVF +H K RKGA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGA 26
>BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 155 bits (375), Expect = 2e-37
Identities = 69/87 (79%), Positives = 78/87 (89%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G VC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V
Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKPILKAGRAYHKYK KRNCW
Sbjct: 170 AGGGRIDKPILKAGRAYHKYKAKRNCW 196
Score = 98.3 bits (234), Expect = 3e-20
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +2
Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
+LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 28 RLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 62.5 bits (145), Expect = 2e-09
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
++TGQFVYCGKKA L VGNV+PVG MPEGT+ L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEK 119
Score = 48.0 bits (109), Expect = 4e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 767 VRGVAMNPVEHPHGGGNHQH 826
VRGVAMNPVEHP GGGNHQH
Sbjct: 199 VRGVAMNPVEHPFGGGNHQH 218
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +3
Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGA 254
MGRVIR QRKGAGSVF +H K RKGA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGA 26
>BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 155 bits (375), Expect = 2e-37
Identities = 69/87 (79%), Positives = 78/87 (89%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G VC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V
Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKPILKAGRAYHKYK KRNCW
Sbjct: 170 AGGGRIDKPILKAGRAYHKYKAKRNCW 196
Score = 98.3 bits (234), Expect = 3e-20
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +2
Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
+LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 28 RLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 62.1 bits (144), Expect = 2e-09
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
++TGQFVYCGKKA L +GNV+PVG MPEGT+ L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119
Score = 48.0 bits (109), Expect = 4e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 767 VRGVAMNPVEHPHGGGNHQH 826
VRGVAMNPVEHP GGGNHQH
Sbjct: 199 VRGVAMNPVEHPFGGGNHQH 218
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +3
Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGA 254
MGRVIR QRKGAGSVF +H K RKGA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGA 26
>BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein.
Length = 211
Score = 155 bits (375), Expect = 2e-37
Identities = 69/87 (79%), Positives = 78/87 (89%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G VC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V
Sbjct: 64 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 123
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKPILKAGRAYHKYK KRNCW
Sbjct: 124 AGGGRIDKPILKAGRAYHKYKAKRNCW 150
Score = 64.5 bits (150), Expect = 4e-10
Identities = 29/35 (82%), Positives = 30/35 (85%)
Frame = +2
Query: 314 DIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
DIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 1 DIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 35
Score = 62.1 bits (144), Expect = 2e-09
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
++TGQFVYCGKKA L +GNV+PVG MPEGT+ L+ K
Sbjct: 36 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 73
Score = 48.0 bits (109), Expect = 4e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 767 VRGVAMNPVEHPHGGGNHQH 826
VRGVAMNPVEHP GGGNHQH
Sbjct: 153 VRGVAMNPVEHPFGGGNHQH 172
>AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 155 bits (375), Expect = 2e-37
Identities = 69/87 (79%), Positives = 78/87 (89%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G VC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V
Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKPILKAGRAYHKYK KRNCW
Sbjct: 170 AGGGRIDKPILKAGRAYHKYKAKRNCW 196
Score = 98.3 bits (234), Expect = 3e-20
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +2
Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
+LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 28 RLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 62.1 bits (144), Expect = 2e-09
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
++TGQFVYCGKKA L +GNV+PVG MPEGT+ L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119
Score = 48.0 bits (109), Expect = 4e-05
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 767 VRGVAMNPVEHPHGGGNHQH 826
VRGVAMNPVEHP GGGNHQH
Sbjct: 199 VRGVAMNPVEHPFGGGNHQH 218
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +3
Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGA 254
MGRVIR QRKGAGSVF +H K RKGA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGA 26
>AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8
protein.
Length = 130
Score = 98.3 bits (234), Expect = 3e-20
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +2
Query: 257 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
+LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 24 RLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 77
Score = 62.1 bits (144), Expect = 2e-09
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
++TGQFVYCGKKA L +GNV+PVG MPEGT+ L+ K
Sbjct: 78 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 115
Score = 41.5 bits (93), Expect = 0.004
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFA 575
G VC LEEK GDRG+LARASGN+A
Sbjct: 106 GTIVCCLEEKPGDRGKLARASGNYA 130
Score = 37.9 bits (84), Expect = 0.044
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3
Query: 189 IRAQRKGAGSVFVSHTKKRKGA 254
IR QRKGAGSVF +H K RKGA
Sbjct: 1 IRGQRKGAGSVFRAHVKHRKGA 22
>AK124779-1|BAC85944.1| 163|Homo sapiens protein ( Homo sapiens
cDNA FLJ42789 fis, clone BRAWH3007221. ).
Length = 163
Score = 32.3 bits (70), Expect = 2.2
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -1
Query: 754 LRLTLYLWYAL-PAFKIGLSIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPIT 578
L LT +L+ A P F++ +S+ PPP ++P P+ ++P L + + P
Sbjct: 87 LFLTHFLYLAASPCFRLSVSLFPPPLSLPRSPI------SVSPPWCLLLTQESKPFFPRG 140
Query: 577 VAKFPEARARRPLSPIFSSRLHTWYPQA 494
AK P+ P ++R TW P A
Sbjct: 141 WAKQPQP------GPFSATRFLTWGPSA 162
>BC071733-1|AAH71733.1| 457|Homo sapiens retinoic acid receptor,
alpha protein.
Length = 457
Score = 31.1 bits (67), Expect = 5.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 423 VEPSGAMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 298
VE G + FLV++ Y +R C KG P PG + L TPL
Sbjct: 5 VEVGGPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48
>AF283809-1|AAF87249.1| 54|Homo sapiens retinoic acid receptor
alpha 2 isoform protein.
Length = 54
Score = 31.1 bits (67), Expect = 5.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 423 VEPSGAMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 298
VE G + FLV++ Y +R C KG P PG + L TPL
Sbjct: 5 VEVGGPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,978,827
Number of Sequences: 237096
Number of extensions: 2812921
Number of successful extensions: 6059
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6058
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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