Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120110.Seq
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.64 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   6.0  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 361 LPRSIQVQDKEGALHCSRRLYTGQFVYCGK 450
           L +S++  DKE  L     LY  +F Y GK
Sbjct: 508 LNKSLKYSDKERDLSLRMILYFSEFAYLGK 537


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -3

Query: 551 QTTSITHFLFKIAHMVPSGIAPTGITFPTSRVAFF 447
           +   + HF F + H  P  +    + FP  R  F+
Sbjct: 224 EDVGLNHFYFMLNHNYPPFMLSNSLNFPQIRGEFY 258


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -3

Query: 551 QTTSITHFLFKIAHMVPSGIAPTGITFPTSRVAFF 447
           +   + HF F + H  P  +    + FP  R  F+
Sbjct: 224 EDVGLNHFYFMLNHNYPPFMLSNSLNFPQIRGEFY 258


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 582 IGHNPDAKRTRVKLPSGAKKVL 647
           IG+  + K+TR  LP+G +KVL
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVL 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,892
Number of Sequences: 438
Number of extensions: 5126
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)