Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120106.Seq
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   3.0  
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ...    25   9.1  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   9.1  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 539  VISICSANLTNQTHRCTVFLCILYGGLSANRFDRLVYRLRFDNISA 402
            VIS C   + N  H  +   C+L   +SA + +R V +  +DN+++
Sbjct: 1008 VISACELVVNNFLHPQSSLYCVLDSDISAGKNNR-VLKFVYDNLAS 1052


>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 229 IWHVTAAPPVNT--NKPPFSQTT-ASKQSLINANF 134
           IWHV+A+P V +  N P    T+  S + +  ANF
Sbjct: 25  IWHVSASPEVGSKYNLPTVPTTSHVSYRQIAKANF 59


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 233 RRRLQKRIKCIDFDYYGLCSKKMFCNLQTN-LQKCVDQHYAELDVLTRQIYMSNPLVMLK 409
           R  L+  +  +D +   LC K +   L  + LQK +     ELD L R++Y  +P  + +
Sbjct: 221 RSYLEFILSNLDLECLTLCLKIIKGILTLDELQKAIKLKQTELDKLERRLYRPSPQNIFE 280

Query: 410 CYQ 418
            ++
Sbjct: 281 IFE 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,211
Number of Sequences: 5004
Number of extensions: 61423
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)