Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120106.Seq
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    29   4.1  
10_01_0016 + 190329-191210,206896-207033,208029-208103,208533-20...    28   7.2  
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522...    28   7.2  
03_06_0662 + 35377974-35378270,35378354-35378623,35378795-353789...    28   7.2  
03_02_0068 + 5390004-5390425,5390517-5390949                           28   7.2  
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601           28   9.5  
01_03_0134 + 12879254-12879596,12879689-12879796,12879905-128800...    28   9.5  

>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 120 IVAKAKLAFIKDCFEAVVCENGGLFVLTGGAAVTCHIDDDD 242
           +   A   F+        C  GGL +L G   V C+ID DD
Sbjct: 439 LTTSASFTFLPFLLRCFFCVFGGLLLLAG-LGVLCYIDQDD 478


>10_01_0016 +
           190329-191210,206896-207033,208029-208103,208533-208639,
           209193-209250,210183-210242,210320-210394,210504-210641,
           211766-211820,212134-212256,212645-212883
          Length = 649

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = -2

Query: 662 QRSALKGRFIMRTLTKNTLKDSGAVVILTQLSVYSSTPYALVISICSANLTNQTHRCTVF 483
           +R + + +++   LT++ LK+  A  +L    +    P     +   A LT  TH   VF
Sbjct: 4   ERESFESQWVPSDLTEDNLKEMVAHGVLPAKEIIWWRP-----AFGEAFLTPDTHEVVVF 58

Query: 482 LCILYGGLS--ANRFDR 438
               YGG S   +RF R
Sbjct: 59  AHFFYGGFSLPTSRFFR 75


>05_06_0273 -
           26851077-26851167,26851433-26851869,26852125-26852271,
           26852352-26854415,26854792-26854908,26855007-26855093,
           26855350-26855439,26855523-26855609,26856736-26856810
          Length = 1064

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 733 RSKRVATTTPTRDIRFQEAKN 671
           R  R+ATT+P   +++QE KN
Sbjct: 718 RPSRLATTSPAEPVKYQETKN 738


>03_06_0662 +
           35377974-35378270,35378354-35378623,35378795-35378973,
           35380073-35380116,35380295-35380384,35380472-35380588,
           35380679-35380803,35380883-35381155,35381253-35381386,
           35381518-35381604,35381714-35381831
          Length = 577

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 648 EGSFHNAHVDKKHVERQRGCGYFNAVVGILVDAVCACY 535
           E   H   +DK+HVE     GY    V +L D +   Y
Sbjct: 263 EAPVHRGGLDKEHVEYLNSLGYPKPPVNVLDDGLILAY 300


>03_02_0068 + 5390004-5390425,5390517-5390949
          Length = 284

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 500 HRCTVFLCILYGGLSANRFDRLVYRLRFDNISALPTDLTCKFDALTRPIQRNVGRRI 330
           HR  ++  +  G ++ + FD   +R R+DN+ A   DL    DAL  P    VG  +
Sbjct: 62  HRVVLYDLVCAGSVNPDHFD---FR-RYDNLDAYVDDLLAILDALRIPRCAFVGHSV 114


>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
          Length = 390

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 15  SSSPLFIMERLLNQLNLGVLPYITTKDI--EDRLRDKIVAKAKL 140
           SS    ++E +LN +  G+L Y+   D+  ED +  ++ +K KL
Sbjct: 325 SSPTALVVEGILNSVAAGILIYMALVDLLAEDFMNPRVQSKGKL 368


>01_03_0134 +
           12879254-12879596,12879689-12879796,12879905-12880000,
           12880090-12880182,12880861-12880949,12881313-12881588,
           12881656-12881808
          Length = 385

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 1/108 (0%)
 Frame = -2

Query: 650 LKGRFIMRTLTKNTLKDSGAVVILTQLSVYSSTPYALVISICSANLTNQTHRCTVFLCIL 471
           LKG  +   LT +     G V      +V S   Y  V  +C+  ++N T+ C   +  +
Sbjct: 239 LKGFIVGNPLTDDQYDSKGLVEYAWSHAVVSDGIYERVKKVCNFKISNWTNDCNEAMSSI 298

Query: 470 YGGLSANRFDRLVYRLRFDNISALPTDLTCKFD-ALTRPIQRNVGRRI 330
           +        D  +Y +     +   T     FD AL    Q    RRI
Sbjct: 299 F--RQYQEID--IYNIYAPKCNLAQTSRVAAFDHALEASDQEQFSRRI 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,170,564
Number of Sequences: 37544
Number of extensions: 377162
Number of successful extensions: 963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)