Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120106.Seq
(774 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X95191-1|CAA64490.1| 290|Homo sapiens delta-sarcoglycan protein. 31 6.1
BX537948-1|CAD97916.1| 289|Homo sapiens hypothetical protein pr... 31 6.1
BC020740-1|AAH20740.1| 290|Homo sapiens sarcoglycan, delta (35k... 31 6.1
BC132739-1|AAI32740.1| 291|Homo sapiens solute carrier family 2... 30 8.0
BC002849-1|AAH02849.1| 177|Homo sapiens coatomer protein comple... 30 8.0
AL627107-4|CAI23613.1| 291|Homo sapiens protein ( udogene, a no... 30 8.0
AF151878-1|AAD34115.1| 177|Homo sapiens CGI-120 protein protein. 30 8.0
AF086911-1|AAP97141.1| 177|Homo sapiens z-cop protein. 30 8.0
AB047848-1|BAB17659.1| 177|Homo sapiens zeta1-COP protein. 30 8.0
>X95191-1|CAA64490.1| 290|Homo sapiens delta-sarcoglycan protein.
Length = 290
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 159 FEAVVCENGGLFVLTGGAAVTCHID 233
FE VC NG LF+ GA TC I+
Sbjct: 261 FEICVCANGRLFLSQAGAGSTCQIN 285
>BX537948-1|CAD97916.1| 289|Homo sapiens hypothetical protein
protein.
Length = 289
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 159 FEAVVCENGGLFVLTGGAAVTCHID 233
FE VC NG LF+ GA TC I+
Sbjct: 260 FEICVCANGRLFLSQAGAGSTCQIN 284
>BC020740-1|AAH20740.1| 290|Homo sapiens sarcoglycan, delta (35kDa
dystrophin-associated glycoprotein) protein.
Length = 290
Score = 30.7 bits (66), Expect = 6.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 159 FEAVVCENGGLFVLTGGAAVTCHID 233
FE VC NG LF+ GA TC I+
Sbjct: 261 FEICVCANGRLFLSQAGAGSTCQIN 285
>BC132739-1|AAI32740.1| 291|Homo sapiens solute carrier family 25,
member 30 protein.
Length = 291
Score = 30.3 bits (65), Expect = 8.0
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = -2
Query: 593 AVVILTQLSVYSSTPYALVISICSANLTNQTHRCTVFLCILYGGLSANRFDRLVYRLRFD 414
A+V+ +L VY T L++S + T TH + F C L G L++N D V R R
Sbjct: 173 AIVVGVELPVYDITKKHLILSGLMGD-TVYTHFLSSFTCGLAGALASNPVD--VVRTRMM 229
Query: 413 N 411
N
Sbjct: 230 N 230
>BC002849-1|AAH02849.1| 177|Homo sapiens coatomer protein complex,
subunit zeta 1 protein.
Length = 177
Score = 30.3 bits (65), Expect = 8.0
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -2
Query: 518 NLTNQTHRCTVFLCILYG--GLSANRFDRLVYRL--RFDNISALPTDLTCKFDALTRPIQ 351
N+ N+THR + +L G + + D Y + ++N L L C FD+L++ ++
Sbjct: 47 NIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106
Query: 350 RNVGRRIFVN*FAG 309
+NV +R + G
Sbjct: 107 KNVEKRALLENMEG 120
>AL627107-4|CAI23613.1| 291|Homo sapiens protein ( udogene, a novel
gene (possible).).
Length = 291
Score = 30.3 bits (65), Expect = 8.0
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = -2
Query: 593 AVVILTQLSVYSSTPYALVISICSANLTNQTHRCTVFLCILYGGLSANRFDRLVYRLRFD 414
A+V+ +L VY T L++S + T TH + F C L G L++N D V R R
Sbjct: 173 AIVVGVELPVYDITKKHLILSGLMGD-TVYTHFLSSFTCGLAGALASNPVD--VVRTRMM 229
Query: 413 N 411
N
Sbjct: 230 N 230
>AF151878-1|AAD34115.1| 177|Homo sapiens CGI-120 protein protein.
Length = 177
Score = 30.3 bits (65), Expect = 8.0
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -2
Query: 518 NLTNQTHRCTVFLCILYG--GLSANRFDRLVYRL--RFDNISALPTDLTCKFDALTRPIQ 351
N+ N+THR + +L G + + D Y + ++N L L C FD+L++ ++
Sbjct: 47 NIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106
Query: 350 RNVGRRIFVN*FAG 309
+NV +R + G
Sbjct: 107 KNVEKRALLENMEG 120
>AF086911-1|AAP97141.1| 177|Homo sapiens z-cop protein.
Length = 177
Score = 30.3 bits (65), Expect = 8.0
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -2
Query: 518 NLTNQTHRCTVFLCILYG--GLSANRFDRLVYRL--RFDNISALPTDLTCKFDALTRPIQ 351
N+ N+THR + +L G + + D Y + ++N L L C FD+L++ ++
Sbjct: 47 NIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106
Query: 350 RNVGRRIFVN*FAG 309
+NV +R + G
Sbjct: 107 KNVEKRALLENMEG 120
>AB047848-1|BAB17659.1| 177|Homo sapiens zeta1-COP protein.
Length = 177
Score = 30.3 bits (65), Expect = 8.0
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -2
Query: 518 NLTNQTHRCTVFLCILYG--GLSANRFDRLVYRL--RFDNISALPTDLTCKFDALTRPIQ 351
N+ N+THR + +L G + + D Y + ++N L L C FD+L++ ++
Sbjct: 47 NIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106
Query: 350 RNVGRRIFVN*FAG 309
+NV +R + G
Sbjct: 107 KNVEKRALLENMEG 120
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,217,267
Number of Sequences: 237096
Number of extensions: 2000775
Number of successful extensions: 4490
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4490
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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