Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120105.Seq
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    28   1.4  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    28   1.4  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   9.7  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 286 YDRLITNIALYDIANNDIPHKTTTFN 363
           + R   NI  Y I NND PH    FN
Sbjct: 600 FRRFTMNIGTYIICNNDCPHMVYGFN 625


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 615 NFVELFLKLSKYRKE*ENQLILKKNRV 695
           +F E  +KLS YRK+  N L+ K N V
Sbjct: 269 SFAERVIKLSNYRKQLHNYLVQKMNVV 295


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 292 RLITNIALYDIANNDIPHKTTTFN*YFGELDLLER 396
           +++   A+Y I N   P K T    Y  + DL+ER
Sbjct: 840 QMLVQFAVYLINNGVEPQKITCLTFYAAQKDLIER 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,064
Number of Sequences: 5004
Number of extensions: 65783
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)