Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120105.Seq
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785...    28   7.7  

>01_06_0997 +
           33676441-33676758,33678223-33678314,33678443-33678540,
           33678824-33678979,33679106-33679731,33679826-33679896,
           33679987-33680241,33680337-33680454,33680595-33680766,
           33680854-33681395
          Length = 815

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = -3

Query: 810 DCSYSVVKTDSRNNR*V*CVSCKYKQIDRVLLEKYIYIIRDFSSILIGFLILCDILKVSG 631
           +CS   +   S N + V C+   +  I R+  + +  +I+  +S LI      D+L    
Sbjct: 454 NCSREALNGTSINGKVVLCIELTFGPIGRIFKDVFAGVIQGGASGLIFAFYTTDVLL--- 510

Query: 630 ITPQSFGASCV*ISNKLTKEI 568
            T    G +CV + N++  ++
Sbjct: 511 STEDCKGIACVFVDNEIGYQV 531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,826,367
Number of Sequences: 37544
Number of extensions: 347374
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)