Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120105.Seq
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58511| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-22)                 30   2.0  
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_52866| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  

>SB_58511| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-22)
          Length = 327

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 45  RHTFQIIVLFQQCFCAFNFCWRLYFLDILR 134
           R  ++ +V+F     AF  CW +YFLD +R
Sbjct: 225 RIQWKAVVIFATMLLAFMICWFVYFLDGIR 254


>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2630

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 2   LNECRDSFTIACKNATHFPN-NCSFST 79
           LN C  +   +C NAT  PN NCS ST
Sbjct: 492 LNNCSSANYTSCANATAAPNSNCSLST 518


>SB_52866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1376

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 157  LWHGTHIRRNISKKYSRQQKLNAQKHC-*KRTIIW 56
            +W G    +   K Y R  KL AQK+C   R IIW
Sbjct: 1169 MWDGKLAAQKYCKYYLRDGKLAAQKYCPPSRPIIW 1203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,571,448
Number of Sequences: 59808
Number of extensions: 463052
Number of successful extensions: 766
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)