Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120105.Seq
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   4.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   5.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   7.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   7.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 288 IWHSAGTFVLGFITGMLF*TMSQ*TALTVYLIINC*NKNISSP 160
           +WH     +LGF+ GML    +    + VY+ ++   K++ +P
Sbjct: 50  MWHG----ILGFVIGMLGFVSAMGNGMVVYIFLS--TKSLRTP 86


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 724 GIIGKIYLHNTRFFFNINWFSHSLRYFESFRNNSTKF 614
           GI+G    H T+  +     SH+L Y  + +    KF
Sbjct: 249 GILGMALSHKTQNLYYSAMSSHNLNYVNTKQFTQGKF 285


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 288 IWHSAGTFVLGFITGMLF*TMSQ*TALTVYLIINC*NKNISSP 160
           +WH     +LGF+ GML         + VY+ ++   K++ +P
Sbjct: 16  MWHG----ILGFVIGMLGFVSVMGNGMVVYIFLS--TKSLRTP 52


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 714 EKYIYIIRDFSSILIGFLILCDILKVSG 631
           E  + +I  F   +IG+ I CD+  V G
Sbjct: 109 EMPMLVISSFMERMIGWEIGCDVYSVFG 136


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 714 EKYIYIIRDFSSILIGFLILCDILKVSG 631
           E  + +I  F   +IG+ I CD+  V G
Sbjct: 109 EMPMLVISSFMERMIGWEIGCDVYSVFG 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,146
Number of Sequences: 438
Number of extensions: 4292
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)